Variant report

Variant	rs13065597
Chromosome Location	chr3:155901936-155901937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11706532	0.94[CEU][hapmap]
rs13062883	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13063680	0.88[CEU][hapmap]
rs13070168	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs13070615	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13077031	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13077893	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13079160	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13084227	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13084675	1.00[ASN][1000 genomes]
rs13085088	0.82[CEU][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13085540	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13086158	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13086539	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13086888	0.94[CEU][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13092781	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13093003	0.94[CEU][hapmap]
rs13098116	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13099875	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1499053	0.83[EUR][1000 genomes]
rs35186736	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35336094	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35489883	1.00[ASN][1000 genomes]
rs35935941	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36023787	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36101183	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59260261	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6441048	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66718940	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67258913	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6770125	0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67899274	0.84[EUR][1000 genomes]
rs6790987	1.00[JPT][hapmap]
rs68058925	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs68188495	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7617514	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7627649	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7627831	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7641186	0.94[CEU][hapmap]
rs7647673	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155899400-155904800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:155899400-155905200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:155899800-155904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:155899800-155904200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:155899800-155904200	Weak transcription	NHEK	skin
7	chr3:155899800-155905200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links