Variant report

Variant	rs7647673
Chromosome Location	chr3:155929050-155929051
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13065597	1.00[JPT][hapmap]
rs13070168	1.00[JPT][hapmap]
rs13070615	1.00[JPT][hapmap]
rs13077031	1.00[JPT][hapmap]
rs17307030	1.00[EUR][1000 genomes]
rs17307121	1.00[EUR][1000 genomes]
rs17307351	1.00[EUR][1000 genomes]
rs55720401	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57615525	1.00[ASN][1000 genomes]
rs6790987	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6809972	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026681	1.00[ASN][1000 genomes]
rs73026692	1.00[ASN][1000 genomes]
rs73026697	1.00[ASN][1000 genomes]
rs73876115	1.00[ASN][1000 genomes]
rs73876120	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155922600-155929800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:155925600-155929800	Enhancers	Fetal Heart	heart
3	chr3:155926600-155929400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:155926600-155933400	Weak transcription	HSMMtube	muscle
5	chr3:155926800-155935600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:155927000-155935400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:155927200-155929200	Weak transcription	Osteobl	bone
8	chr3:155927200-155930400	Weak transcription	Aorta	Aorta
9	chr3:155927800-155930600	Enhancers	HUVEC	blood vessel
10	chr3:155928000-155934400	Weak transcription	Pancreas	Pancrea
11	chr3:155928400-155930200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:155928400-155930800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:155928600-155929600	Weak transcription	Gastric	stomach
14	chr3:155928800-155930000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:155928800-155930800	Enhancers	NHEK	skin
16	chr3:155929000-155930000	Enhancers	HMEC	breast
17	chr3:155929000-155930000	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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