Variant report
| Variant | rs57615525 |
|---|---|
| Chromosome Location | chr3:155841422-155841423 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs16825644 | 1.00[AMR][1000 genomes] |
| rs55720401 | 1.00[ASN][1000 genomes] |
| rs58151385 | 1.00[AMR][1000 genomes] |
| rs58387367 | 1.00[AMR][1000 genomes] |
| rs59555928 | 1.00[AMR][1000 genomes] |
| rs60206885 | 1.00[AMR][1000 genomes] |
| rs67167156 | 1.00[AMR][1000 genomes] |
| rs6784161 | 1.00[AMR][1000 genomes] |
| rs6788822 | 1.00[AMR][1000 genomes] |
| rs6790987 | 1.00[ASN][1000 genomes] |
| rs6809972 | 1.00[ASN][1000 genomes] |
| rs73012220 | 1.00[AMR][1000 genomes] |
| rs73012225 | 1.00[AMR][1000 genomes] |
| rs73012245 | 1.00[AMR][1000 genomes] |
| rs73012911 | 1.00[AMR][1000 genomes] |
| rs73012929 | 1.00[AMR][1000 genomes] |
| rs73012940 | 1.00[AMR][1000 genomes] |
| rs73012954 | 1.00[AMR][1000 genomes] |
| rs73014113 | 1.00[AMR][1000 genomes] |
| rs73014850 | 1.00[AMR][1000 genomes] |
| rs73018956 | 1.00[AMR][1000 genomes] |
| rs73018983 | 1.00[AMR][1000 genomes] |
| rs73018986 | 1.00[AMR][1000 genomes] |
| rs73018995 | 1.00[AMR][1000 genomes] |
| rs73022671 | 1.00[AMR][1000 genomes] |
| rs73024663 | 1.00[AMR][1000 genomes] |
| rs73026681 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73026692 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73026694 | 1.00[AMR][1000 genomes] |
| rs73026697 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73028515 | 1.00[AMR][1000 genomes] |
| rs73028523 | 1.00[AMR][1000 genomes] |
| rs73028525 | 1.00[AMR][1000 genomes] |
| rs73028526 | 1.00[AMR][1000 genomes] |
| rs73876115 | 1.00[ASN][1000 genomes] |
| rs73876120 | 1.00[ASN][1000 genomes] |
| rs7647673 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592085 | chr3:155827634-156012679 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:155838800-155850200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
