Variant report

Variant	rs73028526
Chromosome Location	chr3:155869977-155869978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155869753..155870360-chr3:156258546..156259049,2	K562	blood:
2	chr3:155869333..155870149-chr3:156919186..156919689,2	K562	blood:
3	chr3:155869288..155870259-chr3:156227206..156228043,3	MCF-7	breast:
4	chr3:155869321..155870239-chr3:156099929..156100470,4	K562	blood:
5	chr3:155869353..155870217-chr3:156391481..156391983,2	K562	blood:
6	chr3:155869736..155870260-chr3:156192819..156193450,2	MCF-7	breast:
7	chr3:155869205..155870233-chr3:156227404..156228192,3	K562	blood:
8	chr3:155869742..155871357-chr3:155874306..155876247,2	K562	blood:
9	chr3:155869062..155870058-chr3:156191392..156192210,2	MCF-7	breast:
10	chr3:155869037..155871183-chr3:156875218..156876767,2	K562	blood:
11	chr3:155869256..155870827-chr3:156099723..156101077,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16825644	1.00[AMR][1000 genomes]
rs57615525	1.00[AMR][1000 genomes]
rs58151385	1.00[AMR][1000 genomes]
rs58387367	1.00[AMR][1000 genomes]
rs59555928	1.00[AMR][1000 genomes]
rs60206885	1.00[AMR][1000 genomes]
rs67167156	1.00[AMR][1000 genomes]
rs6784161	1.00[AMR][1000 genomes]
rs6788822	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012220	1.00[AMR][1000 genomes]
rs73012225	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012245	1.00[AMR][1000 genomes]
rs73012929	1.00[AMR][1000 genomes]
rs73012940	1.00[AMR][1000 genomes]
rs73012954	1.00[AMR][1000 genomes]
rs73014113	1.00[AMR][1000 genomes]
rs73014850	1.00[AMR][1000 genomes]
rs73018956	1.00[AMR][1000 genomes]
rs73018983	1.00[AMR][1000 genomes]
rs73018986	1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73022671	1.00[AMR][1000 genomes]
rs73024663	1.00[AMR][1000 genomes]
rs73026681	1.00[AMR][1000 genomes]
rs73026692	1.00[AMR][1000 genomes]
rs73026694	1.00[AMR][1000 genomes]
rs73026697	1.00[AMR][1000 genomes]
rs73028515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028525	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155865600-155870200	Enhancers	Fetal Heart	heart
2	chr3:155866000-155870200	Enhancers	Brain Hippocampus Middle	brain
3	chr3:155866800-155870000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr3:155866800-155870200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:155866800-155870200	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:155867200-155870000	Weak transcription	Aorta	Aorta
7	chr3:155867800-155870000	Weak transcription	Right Atrium	heart
8	chr3:155868600-155873200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:155869600-155870000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:155869600-155870200	Enhancers	Brain Anterior Caudate	brain
11	chr3:155869600-155870200	Enhancers	Fetal Stomach	stomach
12	chr3:155869600-155870200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:155869600-155870800	Enhancers	Colon Smooth Muscle	Colon
14	chr3:155869800-155870000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:155869800-155870000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:155869800-155870000	Enhancers	Brain Substantia Nigra	brain
17	chr3:155869800-155870000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr3:155869800-155870000	Enhancers	HUVEC	blood vessel
19	chr3:155869800-155870000	Enhancers	K562	blood
20	chr3:155869800-155870000	Enhancers	NHDF-Ad	bronchial
21	chr3:155869800-155870000	Flanking Active TSS	NHEK	skin
22	chr3:155869800-155870200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:155869800-155870200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:155869800-155870200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:155869800-155870200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:155869800-155870200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr3:155869800-155870200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr3:155869800-155870200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:155869800-155870200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:155869800-155870200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:155869800-155870200	Enhancers	Adipose Nuclei	Adipose
32	chr3:155869800-155870200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:155869800-155870200	Enhancers	Colonic Mucosa	Colon
34	chr3:155869800-155870200	Enhancers	Esophagus	oesophagus
35	chr3:155869800-155870200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr3:155869800-155870200	Enhancers	Fetal Muscle Trunk	muscle
37	chr3:155869800-155870200	Enhancers	Fetal Muscle Leg	muscle
38	chr3:155869800-155870200	Enhancers	Fetal Thymus	thymus
39	chr3:155869800-155870200	Enhancers	Left Ventricle	heart
40	chr3:155869800-155870200	Enhancers	Pancreas	Pancrea
41	chr3:155869800-155870200	Enhancers	Stomach Mucosa	stomach
42	chr3:155869800-155870200	Enhancers	Hela-S3	cervix
43	chr3:155869800-155870200	Enhancers	NH-A	brain
44	chr3:155869800-155870200	Enhancers	Osteobl	bone
45	chr3:155869800-155870400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr3:155869800-155870400	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr3:155869800-155870400	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr3:155869800-155870400	Enhancers	Stomach Smooth Muscle	stomach
49	chr3:155869800-155870800	Enhancers	Rectal Smooth Muscle	rectum

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