Variant report

Variant	rs73012954
Chromosome Location	chr3:155683605-155683606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11922468	1.00[AMR][1000 genomes]
rs11924623	1.00[AMR][1000 genomes]
rs16825644	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57615525	1.00[AMR][1000 genomes]
rs58421205	1.00[AMR][1000 genomes]
rs58793189	1.00[AMR][1000 genomes]
rs59555928	1.00[AMR][1000 genomes]
rs59649523	1.00[AMR][1000 genomes]
rs59743478	1.00[AMR][1000 genomes]
rs60206885	1.00[AMR][1000 genomes]
rs60579449	1.00[AMR][1000 genomes]
rs67167156	1.00[AMR][1000 genomes]
rs6788822	1.00[AMR][1000 genomes]
rs6806201	1.00[AMR][1000 genomes]
rs73003533	1.00[AMR][1000 genomes]
rs73003544	1.00[AMR][1000 genomes]
rs73003546	1.00[AMR][1000 genomes]
rs73009121	1.00[AMR][1000 genomes]
rs73011111	1.00[AMR][1000 genomes]
rs73011129	1.00[AMR][1000 genomes]
rs73011200	1.00[AMR][1000 genomes]
rs73012911	1.00[AMR][1000 genomes]
rs73012929	1.00[AMR][1000 genomes]
rs73012940	1.00[AMR][1000 genomes]
rs73014850	1.00[AMR][1000 genomes]
rs73018956	1.00[AMR][1000 genomes]
rs73018983	1.00[AMR][1000 genomes]
rs73018986	1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73021536	1.00[AMR][1000 genomes]
rs73021549	1.00[AMR][1000 genomes]
rs73022671	1.00[AMR][1000 genomes]
rs73024663	1.00[AMR][1000 genomes]
rs73026681	1.00[AMR][1000 genomes]
rs73026692	1.00[AMR][1000 genomes]
rs73026694	1.00[AMR][1000 genomes]
rs73026697	1.00[AMR][1000 genomes]
rs73028515	1.00[AMR][1000 genomes]
rs73028523	1.00[AMR][1000 genomes]
rs73028525	1.00[AMR][1000 genomes]
rs73028526	1.00[AMR][1000 genomes]
rs7645121	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155660400-155688000	Weak transcription	Hela-S3	cervix
2	chr3:155679600-155688000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:155680400-155684200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:155682000-155686000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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