Variant report

Variant	rs73011129
Chromosome Location	chr3:155615046-155615047
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11914419	1.00[AMR][1000 genomes]
rs11922468	1.00[AMR][1000 genomes]
rs11924623	1.00[AMR][1000 genomes]
rs11924959	1.00[AMR][1000 genomes]
rs11928132	1.00[AMR][1000 genomes]
rs16825644	1.00[AMR][1000 genomes]
rs58069104	1.00[AMR][1000 genomes]
rs58421205	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58793189	1.00[AMR][1000 genomes]
rs59555928	1.00[AMR][1000 genomes]
rs59649523	1.00[AMR][1000 genomes]
rs59743478	1.00[AMR][1000 genomes]
rs60206885	1.00[AMR][1000 genomes]
rs60579449	1.00[AMR][1000 genomes]
rs6806201	1.00[AMR][1000 genomes]
rs73003533	1.00[AMR][1000 genomes]
rs73003544	1.00[AMR][1000 genomes]
rs73003546	1.00[AMR][1000 genomes]
rs73005138	1.00[AMR][1000 genomes]
rs73009121	1.00[AMR][1000 genomes]
rs73011111	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011200	1.00[AMR][1000 genomes]
rs73012911	1.00[AMR][1000 genomes]
rs73012929	1.00[AMR][1000 genomes]
rs73012940	1.00[AMR][1000 genomes]
rs73012954	1.00[AMR][1000 genomes]
rs73014850	1.00[AMR][1000 genomes]
rs73018956	1.00[AMR][1000 genomes]
rs73018983	1.00[AMR][1000 genomes]
rs73018986	1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73021536	1.00[AMR][1000 genomes]
rs73021549	1.00[AMR][1000 genomes]
rs73022671	1.00[AMR][1000 genomes]
rs73024663	1.00[AMR][1000 genomes]
rs7641442	1.00[AMR][1000 genomes]
rs7645121	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155590200-155643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155591400-155616200	Weak transcription	NHEK	skin
4	chr3:155594200-155622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:155598600-155630000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:155599400-155616400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:155599800-155633400	Weak transcription	Right Ventricle	heart
8	chr3:155600400-155615400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:155600400-155617200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:155603800-155657800	Weak transcription	Esophagus	oesophagus
11	chr3:155604400-155658600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:155605000-155632600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:155607000-155633400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:155607200-155656800	Weak transcription	Small Intestine	intestine
15	chr3:155607400-155615400	Weak transcription	Brain Anterior Caudate	brain
16	chr3:155607400-155625800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:155607400-155630600	Weak transcription	Lung	lung
18	chr3:155607400-155632600	Weak transcription	Gastric	stomach
19	chr3:155607400-155669000	Weak transcription	Pancreas	Pancrea
20	chr3:155607800-155625600	Weak transcription	Brain Germinal Matrix	brain
21	chr3:155608600-155615600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:155608600-155616600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:155608600-155646400	Strong transcription	Dnd41	blood
24	chr3:155608800-155615200	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:155608800-155615400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:155608800-155615800	Weak transcription	Brain Hippocampus Middle	brain
27	chr3:155608800-155630000	Weak transcription	Fetal Heart	heart
28	chr3:155608800-155632600	Weak transcription	Spleen	Spleen
29	chr3:155608800-155633400	Weak transcription	Psoas Muscle	Psoas
30	chr3:155608800-155633800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:155608800-155654800	Weak transcription	Aorta	Aorta
32	chr3:155609000-155615400	Weak transcription	Brain Angular Gyrus	brain
33	chr3:155609000-155615400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr3:155609000-155615600	Weak transcription	Brain Substantia Nigra	brain
35	chr3:155609000-155616000	Weak transcription	NHLF	lung
36	chr3:155609000-155630000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:155609000-155633800	Weak transcription	Stomach Mucosa	stomach
38	chr3:155609200-155622400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr3:155609200-155657200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr3:155609400-155615600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:155609600-155652000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:155609800-155615400	Weak transcription	NH-A	brain
43	chr3:155609800-155627400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr3:155610400-155631200	Strong transcription	K562	blood
45	chr3:155610600-155625600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr3:155610800-155621000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:155610800-155621000	Strong transcription	Hela-S3	cervix
48	chr3:155610800-155625600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:155610800-155625600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:155610800-155632600	Weak transcription	Colonic Mucosa	Colon

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