Variant report

Variant	rs11924623
Chromosome Location	chr3:155492851-155492852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155491839..155493601-chr3:155495108..155496890,2	K562	blood:
2	chr3:155491831..155494360-chr3:155588180..155590433,3	K562	blood:

Variant related genes	Relation type
ENSG00000163655	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11914419	1.00[AMR][1000 genomes]
rs11917394	1.00[AMR][1000 genomes]
rs11922468	1.00[AMR][1000 genomes]
rs11922696	1.00[AMR][1000 genomes]
rs11924959	1.00[AMR][1000 genomes]
rs11928132	1.00[AMR][1000 genomes]
rs58069104	1.00[AMR][1000 genomes]
rs58421205	1.00[AMR][1000 genomes]
rs58793189	1.00[AMR][1000 genomes]
rs59555928	1.00[AMR][1000 genomes]
rs59649523	1.00[AMR][1000 genomes]
rs59743478	1.00[AMR][1000 genomes]
rs60579449	1.00[AMR][1000 genomes]
rs6775538	1.00[AMR][1000 genomes]
rs6806201	1.00[AMR][1000 genomes]
rs72996979	1.00[AMR][1000 genomes]
rs72996983	1.00[AMR][1000 genomes]
rs72998908	1.00[AMR][1000 genomes]
rs72998923	1.00[AMR][1000 genomes]
rs73003533	1.00[AMR][1000 genomes]
rs73003544	1.00[AMR][1000 genomes]
rs73003546	1.00[AMR][1000 genomes]
rs73005063	1.00[AMR][1000 genomes]
rs73005094	1.00[AMR][1000 genomes]
rs73005098	1.00[AMR][1000 genomes]
rs73005138	1.00[AMR][1000 genomes]
rs73007013	1.00[AMR][1000 genomes]
rs73007026	1.00[AMR][1000 genomes]
rs73007035	1.00[AMR][1000 genomes]
rs73009121	1.00[AMR][1000 genomes]
rs73011111	1.00[AMR][1000 genomes]
rs73011129	1.00[AMR][1000 genomes]
rs73011200	1.00[AMR][1000 genomes]
rs73012911	1.00[AMR][1000 genomes]
rs73012929	1.00[AMR][1000 genomes]
rs73012940	1.00[AMR][1000 genomes]
rs73012954	1.00[AMR][1000 genomes]
rs73014850	1.00[AMR][1000 genomes]
rs73021536	1.00[AMR][1000 genomes]
rs73021549	1.00[AMR][1000 genomes]
rs7641442	1.00[AMR][1000 genomes]
rs7645121	1.00[AMR][1000 genomes]
rs7653655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv592079	chr3:155474879-155493915	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1009635	chr3:155475438-155515484	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1007915	chr3:155476547-155513397	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv592080	chr3:155479222-155511844	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv14416	chr3:155479247-155512774	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv592081	chr3:155481097-155493915	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv592082	chr3:155481097-155500859	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1006439	chr3:155481097-155515484	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1014031	chr3:155481097-155524777	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	esv33346	chr3:155481220-155498441	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv3693343	chr3:155481609-155493915	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv516712	chr3:155481609-155493915	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv818180	chr3:155481609-155493915	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv592083	chr3:155484125-155498311	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv963538	chr3:155484316-155497006	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv1001756	chr3:155487190-155515484	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155463800-155501200	Weak transcription	Aorta	Aorta
2	chr3:155467200-155500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:155467200-155508000	Weak transcription	K562	blood
4	chr3:155467200-155508800	Weak transcription	Hela-S3	cervix
5	chr3:155467400-155508400	Weak transcription	HepG2	liver
6	chr3:155471400-155509000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:155472800-155500000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:155474200-155497600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:155476600-155500000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:155478600-155509000	Weak transcription	Gastric	stomach
11	chr3:155480200-155509200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:155480400-155500200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:155480600-155503800	Weak transcription	HUVEC	blood vessel
14	chr3:155481800-155499800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:155482000-155495800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:155484400-155494200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr3:155487000-155510600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:155487000-155511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:155487600-155524200	Weak transcription	Fetal Heart	heart
20	chr3:155488200-155496000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:155488200-155496200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:155488200-155497800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:155488200-155499800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:155488200-155499800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:155488200-155499800	Weak transcription	Brain Substantia Nigra	brain
26	chr3:155488200-155499800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:155488200-155500200	Weak transcription	Brain Angular Gyrus	brain
28	chr3:155488200-155500400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:155488200-155508600	Weak transcription	Lung	lung
30	chr3:155488200-155508600	Weak transcription	A549	lung
31	chr3:155488200-155508800	Weak transcription	Esophagus	oesophagus
32	chr3:155488200-155509400	Weak transcription	Left Ventricle	heart
33	chr3:155488200-155523200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr3:155488400-155498200	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:155488600-155493400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:155488800-155508600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:155489000-155498400	Weak transcription	Ovary	ovary
38	chr3:155489000-155523200	Weak transcription	Thymus	Thymus
39	chr3:155489200-155498400	Weak transcription	Fetal Brain Female	brain
40	chr3:155489200-155499600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr3:155489400-155493000	Strong transcription	Fetal Intestine Large	intestine
42	chr3:155489400-155499800	Weak transcription	Right Ventricle	heart
43	chr3:155489400-155500200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr3:155489600-155497400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr3:155489800-155494200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr3:155489800-155509600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr3:155490000-155499200	Weak transcription	Fetal Intestine Small	intestine
48	chr3:155490000-155499200	Weak transcription	Fetal Stomach	stomach
49	chr3:155490000-155509000	Weak transcription	Pancreas	Pancrea
50	chr3:155490200-155497800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links