Variant report

Variant	rs73003546
Chromosome Location	chr3:155520419-155520420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155520264..155525290-chr3:155586627..155590296,8	K562	blood:
2	chr3:155518354..155522007-chr3:155522292..155525040,7	K562	blood:
3	chr3:155519009..155522125-chr3:155522539..155525495,4	K562	blood:

Variant related genes	Relation type
ENSG00000163655	Chromatin interaction
ENSG00000174928	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11914419	1.00[AMR][1000 genomes]
rs11917394	1.00[AMR][1000 genomes]
rs11922468	1.00[AMR][1000 genomes]
rs11922696	1.00[AMR][1000 genomes]
rs11924623	1.00[AMR][1000 genomes]
rs11924959	1.00[AMR][1000 genomes]
rs11928132	1.00[AMR][1000 genomes]
rs16825644	1.00[AMR][1000 genomes]
rs58069104	1.00[AMR][1000 genomes]
rs58421205	1.00[AMR][1000 genomes]
rs58793189	1.00[AMR][1000 genomes]
rs59555928	1.00[AMR][1000 genomes]
rs59649523	1.00[AMR][1000 genomes]
rs59743478	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60579449	1.00[AMR][1000 genomes]
rs6775538	1.00[AMR][1000 genomes]
rs6806201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72998908	1.00[AMR][1000 genomes]
rs72998923	1.00[AMR][1000 genomes]
rs73003533	1.00[AMR][1000 genomes]
rs73003544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73005063	1.00[AMR][1000 genomes]
rs73005094	1.00[AMR][1000 genomes]
rs73005098	1.00[AMR][1000 genomes]
rs73005138	1.00[AMR][1000 genomes]
rs73007013	1.00[AMR][1000 genomes]
rs73007026	1.00[AMR][1000 genomes]
rs73007035	1.00[AMR][1000 genomes]
rs73009121	1.00[AMR][1000 genomes]
rs73011111	1.00[AMR][1000 genomes]
rs73011129	1.00[AMR][1000 genomes]
rs73011200	1.00[AMR][1000 genomes]
rs73012911	1.00[AMR][1000 genomes]
rs73012929	1.00[AMR][1000 genomes]
rs73012940	1.00[AMR][1000 genomes]
rs73012954	1.00[AMR][1000 genomes]
rs73014850	1.00[AMR][1000 genomes]
rs73018956	1.00[AMR][1000 genomes]
rs73018983	1.00[AMR][1000 genomes]
rs73018986	1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73021536	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021549	1.00[AMR][1000 genomes]
rs7641442	1.00[AMR][1000 genomes]
rs7645121	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014031	chr3:155481097-155524777	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155487600-155524200	Weak transcription	Fetal Heart	heart
2	chr3:155488200-155523200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:155489000-155523200	Weak transcription	Thymus	Thymus
4	chr3:155491600-155523200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:155494400-155523600	Weak transcription	Small Intestine	intestine
6	chr3:155500400-155523200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:155500800-155522600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:155506600-155523000	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:155506800-155523200	Weak transcription	Fetal Kidney	kidney
10	chr3:155507400-155522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:155508800-155522800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:155508800-155523200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:155509000-155523400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:155509000-155523400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:155509200-155523200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:155509200-155523200	Weak transcription	Brain Germinal Matrix	brain
17	chr3:155509400-155522600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:155509400-155523000	Weak transcription	A549	lung
19	chr3:155509400-155523200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr3:155509600-155523200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:155509600-155523200	Weak transcription	Esophagus	oesophagus
22	chr3:155509600-155523400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:155509800-155522400	Weak transcription	Dnd41	blood
24	chr3:155509800-155522800	Weak transcription	Spleen	Spleen
25	chr3:155509800-155523000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:155509800-155523000	Weak transcription	Pancreas	Pancrea
27	chr3:155509800-155523200	Weak transcription	Aorta	Aorta
28	chr3:155509800-155523200	Weak transcription	Right Ventricle	heart
29	chr3:155509800-155523400	Weak transcription	Fetal Lung	lung
30	chr3:155510000-155522000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr3:155510000-155522800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:155510000-155523000	Weak transcription	Adipose Nuclei	Adipose
33	chr3:155510000-155523000	Weak transcription	Brain Anterior Caudate	brain
34	chr3:155510000-155523000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:155510000-155523000	Weak transcription	Lung	lung
36	chr3:155510000-155523000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:155510000-155523000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr3:155510000-155523200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:155510000-155523200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:155510000-155523200	Weak transcription	Gastric	stomach
41	chr3:155510000-155523400	Weak transcription	Fetal Stomach	stomach
42	chr3:155510200-155523200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:155510200-155523200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:155510200-155523200	Weak transcription	Left Ventricle	heart
45	chr3:155510400-155523200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:155510600-155522600	Weak transcription	Brain Angular Gyrus	brain
47	chr3:155510800-155523000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr3:155511200-155523000	Weak transcription	Primary T cells from cord blood	blood
49	chr3:155512000-155521800	Weak transcription	Fetal Intestine Large	intestine
50	chr3:155512000-155523000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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