Variant report

Variant	rs7641442
Chromosome Location	chr3:155419835-155419836
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155074075..155074622-chr3:155419261..155420274,3	K562	blood:
2	chr3:155074208..155074956-chr3:155419567..155420189,2	MCF-7	breast:
3	chr3:155070467..155071395-chr3:155419423..155420352,4	K562	blood:
4	chr3:155099947..155101105-chr3:155419243..155420372,8	K562	blood:
5	chr3:155070527..155071479-chr3:155419274..155420293,4	MCF-7	breast:
6	chr3:155138776..155139298-chr3:155419434..155420178,2	MCF-7	breast:
7	chr3:155099375..155100930-chr3:155418818..155420546,12	MCF-7	breast:
8	chr3:155100129..155101039-chr3:155419368..155420316,12	MCF-7	breast:
9	chr3:155072085..155073011-chr3:155419476..155420067,2	MCF-7	breast:

No data

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11914419	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11917394	1.00[AMR][1000 genomes]
rs11922468	1.00[AMR][1000 genomes]
rs11922696	1.00[AMR][1000 genomes]
rs11924623	1.00[AMR][1000 genomes]
rs11924959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11928132	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs58069104	1.00[AMR][1000 genomes]
rs58421205	1.00[AMR][1000 genomes]
rs58793189	1.00[AMR][1000 genomes]
rs59649523	1.00[AMR][1000 genomes]
rs59743478	1.00[AMR][1000 genomes]
rs60579449	1.00[AMR][1000 genomes]
rs6775538	1.00[AMR][1000 genomes]
rs6806201	1.00[AMR][1000 genomes]
rs72996979	1.00[AMR][1000 genomes]
rs72996983	1.00[AMR][1000 genomes]
rs72998908	1.00[AMR][1000 genomes]
rs72998923	1.00[AMR][1000 genomes]
rs73003533	1.00[AMR][1000 genomes]
rs73003544	1.00[AMR][1000 genomes]
rs73003546	1.00[AMR][1000 genomes]
rs73005063	1.00[AMR][1000 genomes]
rs73005094	1.00[AMR][1000 genomes]
rs73005098	1.00[AMR][1000 genomes]
rs73005138	1.00[AMR][1000 genomes]
rs73007013	1.00[AMR][1000 genomes]
rs73007026	1.00[AMR][1000 genomes]
rs73007035	1.00[AMR][1000 genomes]
rs73009121	1.00[AMR][1000 genomes]
rs73011111	1.00[AMR][1000 genomes]
rs73011129	1.00[AMR][1000 genomes]
rs73011200	1.00[AMR][1000 genomes]
rs73021536	1.00[AMR][1000 genomes]
rs73021549	1.00[AMR][1000 genomes]
rs7628745	0.90[YRI][hapmap]
rs7645121	1.00[AMR][1000 genomes]
rs7653655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155399800-155422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155400600-155421000	Weak transcription	Fetal Intestine Small	intestine
3	chr3:155409200-155422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:155411000-155420600	Weak transcription	Fetal Intestine Large	intestine
5	chr3:155412600-155422400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
7	chr3:155413800-155432000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:155414000-155420600	Weak transcription	Brain Germinal Matrix	brain
9	chr3:155415000-155421200	Weak transcription	Stomach Mucosa	stomach
10	chr3:155415600-155421400	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:155417400-155421600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:155418000-155421600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:155418400-155420200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:155418600-155420200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:155418600-155420200	Enhancers	A549	lung
16	chr3:155418600-155421200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:155418800-155423400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:155418800-155423400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:155419000-155420200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:155419200-155420400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:155419200-155423600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:155419400-155420200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:155419400-155420200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr3:155419400-155420200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:155419400-155421400	Weak transcription	Brain Anterior Caudate	brain
26	chr3:155419600-155420000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:155419600-155420200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr3:155419600-155420800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:155419600-155422400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:155419800-155421200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:155419800-155421200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:155419800-155421200	Weak transcription	Brain Angular Gyrus	brain

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