Variant report

Variant	rs58793189
Chromosome Location	chr3:155489183-155489184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155481429..155485286-chr3:155486373..155491702,5	K562	blood:
2	chr3:155488449..155490862-chr3:155570678..155572291,2	MCF-7	breast:
3	chr3:155480147..155483683-chr3:155487368..155490043,3	K562	blood:

Variant related genes	Relation type
ENSG00000169359	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11914419	1.00[AMR][1000 genomes]
rs11917394	1.00[AMR][1000 genomes]
rs11922468	1.00[AMR][1000 genomes]
rs11922696	1.00[AMR][1000 genomes]
rs11924623	1.00[AMR][1000 genomes]
rs11924959	1.00[AMR][1000 genomes]
rs11928132	1.00[AMR][1000 genomes]
rs58069104	1.00[AMR][1000 genomes]
rs58421205	1.00[AMR][1000 genomes]
rs59555928	1.00[AMR][1000 genomes]
rs59649523	1.00[AMR][1000 genomes]
rs59743478	1.00[AMR][1000 genomes]
rs60579449	1.00[AMR][1000 genomes]
rs6775538	1.00[AMR][1000 genomes]
rs6806201	1.00[AMR][1000 genomes]
rs72996979	1.00[AMR][1000 genomes]
rs72996983	1.00[AMR][1000 genomes]
rs72998908	1.00[AMR][1000 genomes]
rs72998923	1.00[AMR][1000 genomes]
rs73003533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73003544	1.00[AMR][1000 genomes]
rs73003546	1.00[AMR][1000 genomes]
rs73005063	1.00[AMR][1000 genomes]
rs73005094	1.00[AMR][1000 genomes]
rs73005098	1.00[AMR][1000 genomes]
rs73005138	1.00[AMR][1000 genomes]
rs73007013	1.00[AMR][1000 genomes]
rs73007026	1.00[AMR][1000 genomes]
rs73007035	1.00[AMR][1000 genomes]
rs73009121	1.00[AMR][1000 genomes]
rs73011111	1.00[AMR][1000 genomes]
rs73011129	1.00[AMR][1000 genomes]
rs73011200	1.00[AMR][1000 genomes]
rs73012911	1.00[AMR][1000 genomes]
rs73012929	1.00[AMR][1000 genomes]
rs73012940	1.00[AMR][1000 genomes]
rs73012954	1.00[AMR][1000 genomes]
rs73014850	1.00[AMR][1000 genomes]
rs73021536	1.00[AMR][1000 genomes]
rs73021549	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7641442	1.00[AMR][1000 genomes]
rs7645121	1.00[AMR][1000 genomes]
rs7653655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv592079	chr3:155474879-155493915	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1009635	chr3:155475438-155515484	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010726	chr3:155476547-155492177	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1007915	chr3:155476547-155513397	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv592080	chr3:155479222-155511844	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv14416	chr3:155479247-155512774	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv514997	chr3:155481066-155491738	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv441844	chr3:155481096-155492177	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv2763741	chr3:155481097-155492177	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1004723	chr3:155481097-155492177	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv592081	chr3:155481097-155493915	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv592082	chr3:155481097-155500859	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv1006439	chr3:155481097-155515484	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv1014031	chr3:155481097-155524777	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
18	esv33346	chr3:155481220-155498441	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	esv3693343	chr3:155481609-155493915	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv516712	chr3:155481609-155493915	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv818180	chr3:155481609-155493915	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv592083	chr3:155484125-155498311	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv963538	chr3:155484316-155497006	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	esv2757018	chr3:155485302-155491007	Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv2759192	chr3:155485302-155491007	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv1001756	chr3:155487190-155515484	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
27	esv2753296	chr3:155487298-155491298	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155463800-155501200	Weak transcription	Aorta	Aorta
2	chr3:155464200-155489600	Weak transcription	Brain Anterior Caudate	brain
3	chr3:155464200-155490600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:155467200-155500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:155467200-155508000	Weak transcription	K562	blood
6	chr3:155467200-155508800	Weak transcription	Hela-S3	cervix
7	chr3:155467400-155508400	Weak transcription	HepG2	liver
8	chr3:155471400-155509000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:155472800-155500000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:155474200-155490600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:155474200-155497600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:155474400-155492000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr3:155475200-155491000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:155475200-155492200	Weak transcription	Fetal Kidney	kidney
15	chr3:155476600-155500000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:155478600-155509000	Weak transcription	Gastric	stomach
17	chr3:155478800-155492600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:155479000-155492000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:155479200-155490600	Weak transcription	Fetal Lung	lung
20	chr3:155480200-155509200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:155480400-155500200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr3:155480600-155503800	Weak transcription	HUVEC	blood vessel
23	chr3:155481800-155499800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:155482000-155495800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:155484400-155494200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:155487000-155510600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:155487000-155511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:155487200-155489200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:155487400-155489200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr3:155487400-155489200	ZNF genes & repeats	Liver	Liver
31	chr3:155487400-155489400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:155487400-155489400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr3:155487600-155489400	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr3:155487600-155524200	Weak transcription	Fetal Heart	heart
35	chr3:155487800-155489400	ZNF genes & repeats	Fetal Intestine Large	intestine
36	chr3:155487800-155489400	Strong transcription	Right Ventricle	heart
37	chr3:155487800-155489800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr3:155487800-155490000	Strong transcription	Primary T cells from cord blood	blood
39	chr3:155487800-155490000	Strong transcription	Adipose Nuclei	Adipose
40	chr3:155488000-155490400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:155488200-155489200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:155488200-155490200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:155488200-155490400	Weak transcription	Psoas Muscle	Psoas
44	chr3:155488200-155490600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:155488200-155496000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:155488200-155496200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:155488200-155497800	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:155488200-155499800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:155488200-155499800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:155488200-155499800	Weak transcription	Brain Substantia Nigra	brain

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