Variant report

Variant	rs73012929
Chromosome Location	chr3:155670255-155670256
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155667354..155670338-chr3:155682833..155685350,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11922468	1.00[AMR][1000 genomes]
rs11924623	1.00[AMR][1000 genomes]
rs16825644	1.00[AMR][1000 genomes]
rs57615525	1.00[AMR][1000 genomes]
rs58069104	1.00[AMR][1000 genomes]
rs58421205	1.00[AMR][1000 genomes]
rs58793189	1.00[AMR][1000 genomes]
rs59555928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59649523	1.00[AMR][1000 genomes]
rs59743478	1.00[AMR][1000 genomes]
rs60206885	1.00[AMR][1000 genomes]
rs60579449	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67167156	1.00[AMR][1000 genomes]
rs6806201	1.00[AMR][1000 genomes]
rs73003533	1.00[AMR][1000 genomes]
rs73003544	1.00[AMR][1000 genomes]
rs73003546	1.00[AMR][1000 genomes]
rs73005138	1.00[AMR][1000 genomes]
rs73009121	1.00[AMR][1000 genomes]
rs73011111	1.00[AMR][1000 genomes]
rs73011129	1.00[AMR][1000 genomes]
rs73011200	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012940	1.00[AMR][1000 genomes]
rs73012954	1.00[AMR][1000 genomes]
rs73014850	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018956	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018983	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018986	1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73021536	1.00[AMR][1000 genomes]
rs73021549	1.00[AMR][1000 genomes]
rs73022671	1.00[AMR][1000 genomes]
rs73024663	1.00[AMR][1000 genomes]
rs73026681	1.00[AMR][1000 genomes]
rs73026692	1.00[AMR][1000 genomes]
rs73026694	1.00[AMR][1000 genomes]
rs73026697	1.00[AMR][1000 genomes]
rs73028515	1.00[AMR][1000 genomes]
rs73028523	1.00[AMR][1000 genomes]
rs73028525	1.00[AMR][1000 genomes]
rs73028526	1.00[AMR][1000 genomes]
rs7645121	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155639600-155671000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:155654200-155675800	Weak transcription	NHEK	skin
3	chr3:155656200-155670400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:155657200-155678200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:155659800-155678800	Weak transcription	A549	lung
6	chr3:155660400-155688000	Weak transcription	Hela-S3	cervix
7	chr3:155663600-155676200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:155664200-155679200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:155664400-155679200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:155664600-155676400	Weak transcription	HSMMtube	muscle
11	chr3:155664600-155677400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:155664600-155677600	Weak transcription	HSMM	muscle
13	chr3:155664600-155681200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:155665600-155675800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:155667000-155675000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:155667000-155677400	Weak transcription	Osteobl	bone
17	chr3:155667600-155677400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:155668200-155670600	Enhancers	K562	blood
19	chr3:155668400-155670400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:155668400-155670400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr3:155669000-155670600	Enhancers	Ovary	ovary
22	chr3:155669800-155675200	Weak transcription	Pancreas	Pancrea
23	chr3:155670000-155670400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr3:155670200-155670400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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