Variant report

Variant	rs73028525
Chromosome Location	chr3:155869070-155869071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155868593..155869135-chr3:156248238..156248852,2	MCF-7	breast:
2	chr3:155728335..155729330-chr3:155867949..155869190,6	MCF-7	breast:
3	chr3:155867950..155869167-chr3:156391442..156392069,3	MCF-7	breast:
4	chr3:155869062..155870058-chr3:156191392..156192210,2	MCF-7	breast:
5	chr3:155869037..155871183-chr3:156875218..156876767,2	K562	blood:
6	chr3:155862023..155863592-chr3:155867276..155869925,2	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11927350	0.83[EUR][1000 genomes]
rs13318658	0.83[EUR][1000 genomes]
rs1386959	0.83[EUR][1000 genomes]
rs16825644	1.00[AMR][1000 genomes]
rs16825729	0.83[EUR][1000 genomes]
rs16825730	0.83[EUR][1000 genomes]
rs16825750	0.83[EUR][1000 genomes]
rs57299583	0.83[EUR][1000 genomes]
rs57615525	1.00[AMR][1000 genomes]
rs58151385	1.00[AMR][1000 genomes]
rs58387367	1.00[AMR][1000 genomes]
rs59555928	1.00[AMR][1000 genomes]
rs59619851	0.83[EUR][1000 genomes]
rs59897122	0.83[EUR][1000 genomes]
rs60206885	1.00[AMR][1000 genomes]
rs61314882	0.83[EUR][1000 genomes]
rs6441033	0.83[EUR][1000 genomes]
rs67167156	1.00[AMR][1000 genomes]
rs6784161	1.00[AMR][1000 genomes]
rs6788822	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6790987	0.89[EUR][1000 genomes]
rs73012220	1.00[AMR][1000 genomes]
rs73012225	1.00[AMR][1000 genomes]
rs73012245	1.00[AMR][1000 genomes]
rs73012929	1.00[AMR][1000 genomes]
rs73012940	1.00[AMR][1000 genomes]
rs73012954	1.00[AMR][1000 genomes]
rs73014113	1.00[AMR][1000 genomes]
rs73014850	1.00[AMR][1000 genomes]
rs73018956	1.00[AMR][1000 genomes]
rs73018983	1.00[AMR][1000 genomes]
rs73018986	1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73022671	1.00[AMR][1000 genomes]
rs73024639	0.83[EUR][1000 genomes]
rs73024663	1.00[AMR][1000 genomes]
rs73024672	0.83[EUR][1000 genomes]
rs73024678	0.83[EUR][1000 genomes]
rs73024680	0.83[EUR][1000 genomes]
rs73024689	0.83[EUR][1000 genomes]
rs73026652	0.83[EUR][1000 genomes]
rs73026681	1.00[AMR][1000 genomes]
rs73026692	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73026694	1.00[AMR][1000 genomes]
rs73026697	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73028515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028526	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876115	0.95[EUR][1000 genomes]
rs73876120	0.89[EUR][1000 genomes]
rs7615392	0.83[EUR][1000 genomes]
rs7622968	0.83[EUR][1000 genomes]
rs7632687	0.83[EUR][1000 genomes]
rs7644291	0.83[EUR][1000 genomes]
rs9681730	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155863000-155869800	Weak transcription	Left Ventricle	heart
2	chr3:155865600-155870200	Enhancers	Fetal Heart	heart
3	chr3:155865800-155869800	Weak transcription	Pancreas	Pancrea
4	chr3:155866000-155870200	Enhancers	Brain Hippocampus Middle	brain
5	chr3:155866400-155869200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr3:155866800-155869200	Enhancers	Colon Smooth Muscle	Colon
7	chr3:155866800-155870000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:155866800-155870200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:155866800-155870200	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:155867200-155870000	Weak transcription	Aorta	Aorta
11	chr3:155867400-155869200	Enhancers	Brain Anterior Caudate	brain
12	chr3:155867600-155869800	Weak transcription	K562	blood
13	chr3:155867800-155870000	Weak transcription	Right Atrium	heart
14	chr3:155868000-155869800	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:155868200-155869800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:155868200-155869800	Weak transcription	Adipose Nuclei	Adipose
17	chr3:155868400-155869600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:155868400-155869800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:155868400-155869800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:155868400-155869800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:155868400-155869800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:155868400-155869800	Weak transcription	Brain Substantia Nigra	brain
23	chr3:155868400-155869800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:155868400-155869800	Weak transcription	HUVEC	blood vessel
25	chr3:155868400-155869800	Weak transcription	NHDF-Ad	bronchial
26	chr3:155868400-155869800	Weak transcription	Osteobl	bone
27	chr3:155868600-155869600	Weak transcription	Fetal Stomach	stomach
28	chr3:155868600-155869800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr3:155868600-155869800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:155868600-155873200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr3:155868800-155869800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:155868800-155869800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr3:155869000-155869800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:155869000-155869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:155869000-155869800	Weak transcription	Colonic Mucosa	Colon
36	chr3:155869000-155869800	Weak transcription	Fetal Thymus	thymus

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