Variant report

Variant	rs16825750
Chromosome Location	chr3:155829782-155829783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11927350	1.00[EUR][1000 genomes]
rs13078030	1.00[CEU][hapmap]
rs13318658	1.00[EUR][1000 genomes]
rs1386959	1.00[EUR][1000 genomes]
rs16825729	1.00[EUR][1000 genomes]
rs16825730	1.00[EUR][1000 genomes]
rs16825742	1.00[AMR][1000 genomes]
rs55942399	1.00[AMR][1000 genomes]
rs57299583	1.00[EUR][1000 genomes]
rs59619851	1.00[EUR][1000 genomes]
rs59897122	1.00[EUR][1000 genomes]
rs61314882	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441033	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765760	1.00[AMR][1000 genomes]
rs73022655	1.00[AMR][1000 genomes]
rs73022660	1.00[AMR][1000 genomes]
rs73022664	1.00[AMR][1000 genomes]
rs73024639	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024650	1.00[AMR][1000 genomes]
rs73024660	1.00[AMR][1000 genomes]
rs73024672	1.00[EUR][1000 genomes]
rs73024677	0.88[EUR][1000 genomes]
rs73024678	1.00[EUR][1000 genomes]
rs73024680	1.00[EUR][1000 genomes]
rs73024689	1.00[EUR][1000 genomes]
rs73026652	1.00[EUR][1000 genomes]
rs73026664	1.00[AMR][1000 genomes]
rs73026670	1.00[AMR][1000 genomes]
rs73026692	1.00[EUR][1000 genomes]
rs73026697	1.00[EUR][1000 genomes]
rs73028525	0.83[EUR][1000 genomes]
rs7615392	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7622968	1.00[EUR][1000 genomes]
rs7632687	1.00[EUR][1000 genomes]
rs7644291	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9681730	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816433	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155829200-155829800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:155829400-155829800	Enhancers	Muscle Satellite Cultured Cells	--

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