Variant report

Variant	rs55942399
Chromosome Location	chr3:155811513-155811514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16825742	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16825750	1.00[AMR][1000 genomes]
rs61314882	1.00[AMR][1000 genomes]
rs6441033	1.00[AMR][1000 genomes]
rs6765760	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73022655	1.00[AMR][1000 genomes]
rs73022660	1.00[AMR][1000 genomes]
rs73022664	1.00[AMR][1000 genomes]
rs73024639	1.00[AMR][1000 genomes]
rs73024650	1.00[AMR][1000 genomes]
rs73024660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73026664	1.00[AMR][1000 genomes]
rs73026670	1.00[AMR][1000 genomes]
rs7615392	1.00[AMR][1000 genomes]
rs7617976	0.95[AFR][1000 genomes]
rs7644291	1.00[AMR][1000 genomes]
rs9681730	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155800200-155811800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155808800-155811800	Weak transcription	Fetal Brain Male	brain
3	chr3:155811000-155811800	Weak transcription	Liver	Liver
4	chr3:155811400-155812000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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