Variant report
| Variant | rs7644291 |
|---|---|
| Chromosome Location | chr3:155832540-155832541 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr3:155832344-155832544 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000242537 | TF binding region |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11927350 | 1.00[EUR][1000 genomes] |
| rs13318658 | 1.00[EUR][1000 genomes] |
| rs1386959 | 1.00[EUR][1000 genomes] |
| rs16825729 | 1.00[EUR][1000 genomes] |
| rs16825730 | 1.00[EUR][1000 genomes] |
| rs16825742 | 1.00[AMR][1000 genomes] |
| rs16825750 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55942399 | 1.00[AMR][1000 genomes] |
| rs57299583 | 1.00[EUR][1000 genomes] |
| rs59619851 | 1.00[EUR][1000 genomes] |
| rs59897122 | 1.00[EUR][1000 genomes] |
| rs61314882 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6441033 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6765760 | 1.00[AMR][1000 genomes] |
| rs73022655 | 1.00[AMR][1000 genomes] |
| rs73022660 | 1.00[AMR][1000 genomes] |
| rs73022664 | 1.00[AMR][1000 genomes] |
| rs73024639 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73024650 | 1.00[AMR][1000 genomes] |
| rs73024660 | 1.00[AMR][1000 genomes] |
| rs73024672 | 1.00[EUR][1000 genomes] |
| rs73024677 | 0.88[EUR][1000 genomes] |
| rs73024678 | 1.00[EUR][1000 genomes] |
| rs73024680 | 1.00[EUR][1000 genomes] |
| rs73024689 | 1.00[EUR][1000 genomes] |
| rs73026652 | 1.00[EUR][1000 genomes] |
| rs73026664 | 1.00[AMR][1000 genomes] |
| rs73026670 | 1.00[AMR][1000 genomes] |
| rs73026692 | 1.00[EUR][1000 genomes] |
| rs73026697 | 1.00[EUR][1000 genomes] |
| rs73028525 | 0.83[EUR][1000 genomes] |
| rs7615392 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7622968 | 1.00[EUR][1000 genomes] |
| rs7632687 | 1.00[EUR][1000 genomes] |
| rs9681730 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9816433 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592085 | chr3:155827634-156012679 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
