Variant report

Variant	rs11927350
Chromosome Location	chr3:155826590-155826591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13078030	1.00[CEU][hapmap]
rs13318658	1.00[EUR][1000 genomes]
rs1386959	1.00[EUR][1000 genomes]
rs16825729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16825730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16825750	1.00[EUR][1000 genomes]
rs57299583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59619851	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59897122	1.00[EUR][1000 genomes]
rs61314882	1.00[EUR][1000 genomes]
rs6441033	1.00[EUR][1000 genomes]
rs73024639	1.00[EUR][1000 genomes]
rs73024672	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73024678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024686	1.00[AFR][1000 genomes]
rs73024689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73026652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73026692	1.00[EUR][1000 genomes]
rs73026697	1.00[EUR][1000 genomes]
rs73028525	0.83[EUR][1000 genomes]
rs7615392	1.00[EUR][1000 genomes]
rs7622968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7632687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7644291	1.00[EUR][1000 genomes]
rs9681730	1.00[EUR][1000 genomes]
rs9816433	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155821000-155827600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:155823000-155827800	Weak transcription	Pancreas	Pancrea
3	chr3:155825600-155826800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:155825600-155827200	Weak transcription	Aorta	Aorta
5	chr3:155825800-155826600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:155826200-155828200	Enhancers	Fetal Lung	lung
7	chr3:155826400-155827400	Enhancers	Adipose Nuclei	Adipose

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