Variant report

Variant	rs1386959
Chromosome Location	chr3:155806055-155806056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11927350	1.00[EUR][1000 genomes]
rs13318658	1.00[EUR][1000 genomes]
rs16825729	1.00[EUR][1000 genomes]
rs16825730	1.00[EUR][1000 genomes]
rs16825750	1.00[EUR][1000 genomes]
rs57299583	1.00[EUR][1000 genomes]
rs59619851	1.00[EUR][1000 genomes]
rs59897122	1.00[EUR][1000 genomes]
rs61314882	1.00[EUR][1000 genomes]
rs6441033	1.00[EUR][1000 genomes]
rs73024639	1.00[EUR][1000 genomes]
rs73024672	1.00[EUR][1000 genomes]
rs73024677	0.88[EUR][1000 genomes]
rs73024678	1.00[EUR][1000 genomes]
rs73024680	1.00[EUR][1000 genomes]
rs73024689	1.00[EUR][1000 genomes]
rs73026652	1.00[EUR][1000 genomes]
rs73026692	1.00[EUR][1000 genomes]
rs73026697	1.00[EUR][1000 genomes]
rs73028525	0.83[EUR][1000 genomes]
rs7615392	1.00[EUR][1000 genomes]
rs7622968	1.00[EUR][1000 genomes]
rs7632687	1.00[EUR][1000 genomes]
rs7644291	1.00[EUR][1000 genomes]
rs9681730	1.00[EUR][1000 genomes]
rs9816433	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155800200-155811800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155805600-155806800	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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