Variant report
| Variant | rs59897122 |
|---|---|
| Chromosome Location | chr3:155836632-155836633 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11927350 | 1.00[EUR][1000 genomes] |
| rs13318658 | 1.00[EUR][1000 genomes] |
| rs1386959 | 1.00[EUR][1000 genomes] |
| rs16825729 | 1.00[EUR][1000 genomes] |
| rs16825730 | 1.00[EUR][1000 genomes] |
| rs16825750 | 1.00[EUR][1000 genomes] |
| rs57299583 | 1.00[EUR][1000 genomes] |
| rs59619851 | 1.00[EUR][1000 genomes] |
| rs61314882 | 1.00[EUR][1000 genomes] |
| rs6441033 | 1.00[EUR][1000 genomes] |
| rs73024639 | 1.00[EUR][1000 genomes] |
| rs73024672 | 1.00[EUR][1000 genomes] |
| rs73024677 | 0.88[EUR][1000 genomes] |
| rs73024678 | 1.00[EUR][1000 genomes] |
| rs73024680 | 1.00[EUR][1000 genomes] |
| rs73024689 | 1.00[EUR][1000 genomes] |
| rs73026652 | 1.00[EUR][1000 genomes] |
| rs73026692 | 1.00[EUR][1000 genomes] |
| rs73026697 | 1.00[EUR][1000 genomes] |
| rs73028525 | 0.83[EUR][1000 genomes] |
| rs7615392 | 1.00[EUR][1000 genomes] |
| rs7622968 | 1.00[EUR][1000 genomes] |
| rs7632687 | 1.00[EUR][1000 genomes] |
| rs7644291 | 1.00[EUR][1000 genomes] |
| rs9681730 | 1.00[EUR][1000 genomes] |
| rs9816433 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592085 | chr3:155827634-156012679 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:155836600-155836800 | Enhancers | Pancreas | Pancrea |
