Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155811121..155812697-chr4:74123629..74125315,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250220	Chromatin interaction
ENSG00000132466	Chromatin interaction

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11927350	1.00[EUR][1000 genomes]
rs13318658	1.00[EUR][1000 genomes]
rs1386959	1.00[EUR][1000 genomes]
rs16825729	1.00[EUR][1000 genomes]
rs16825730	1.00[EUR][1000 genomes]
rs16825742	1.00[AMR][1000 genomes]
rs16825750	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55942399	1.00[AMR][1000 genomes]
rs57299583	1.00[EUR][1000 genomes]
rs59619851	1.00[EUR][1000 genomes]
rs59897122	1.00[EUR][1000 genomes]
rs61314882	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765760	1.00[AMR][1000 genomes]
rs73022655	1.00[AMR][1000 genomes]
rs73022660	1.00[AMR][1000 genomes]
rs73022664	1.00[AMR][1000 genomes]
rs73024639	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024650	1.00[AMR][1000 genomes]
rs73024660	1.00[AMR][1000 genomes]
rs73024672	1.00[EUR][1000 genomes]
rs73024677	0.88[EUR][1000 genomes]
rs73024678	1.00[EUR][1000 genomes]
rs73024680	1.00[EUR][1000 genomes]
rs73024689	1.00[EUR][1000 genomes]
rs73026652	1.00[EUR][1000 genomes]
rs73026664	1.00[AMR][1000 genomes]
rs73026670	1.00[AMR][1000 genomes]
rs73026692	1.00[EUR][1000 genomes]
rs73026697	1.00[EUR][1000 genomes]
rs73028525	0.83[EUR][1000 genomes]
rs7615392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7622968	1.00[EUR][1000 genomes]
rs7632687	1.00[EUR][1000 genomes]
rs7644291	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816433	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155811600-155812600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:155811800-155812200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:155811800-155812200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr3:155811800-155812200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:155811800-155812200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:155811800-155812200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:155811800-155812400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:155811800-155812400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:155811800-155812400	Enhancers	Liver	Liver
10	chr3:155811800-155812600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:155811800-155812600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:155811800-155813200	Enhancers	Fetal Brain Male	brain
13	chr3:155812000-155812400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:155812000-155812400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:155812000-155812400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr3:155812000-155812400	Enhancers	HepG2	liver
17	chr3:155812000-155812600	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search: