Variant report

Variant	rs13078030
Chromosome Location	chr3:155976765-155976766
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11706532	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13063680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077745	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079647	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13081735	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13093003	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66901908	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71623492	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7641186	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9816433	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155970000-155977400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155974400-155977400	Weak transcription	HUVEC	blood vessel
3	chr3:155975400-155978400	Weak transcription	NHEK	skin
4	chr3:155976000-155977000	Enhancers	HSMMtube	muscle
5	chr3:155976200-155977000	Enhancers	Fetal Heart	heart
6	chr3:155976200-155978400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:155976200-155978400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:155976400-155976800	Enhancers	Aorta	Aorta
9	chr3:155976400-155977000	Enhancers	Colon Smooth Muscle	Colon
10	chr3:155976600-155976800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:155976600-155976800	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:155976600-155977000	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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