Variant report

Variant	rs13079647
Chromosome Location	chr3:155985544-155985545
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11706532	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13063680	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13077745	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13078030	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13081735	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13093003	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66901908	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71623492	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7641186	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155983400-155993000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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