Variant report

Variant	rs6784161
Chromosome Location	chr3:155938769-155938770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57615525	1.00[AMR][1000 genomes]
rs58151385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58387367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60206885	1.00[AMR][1000 genomes]
rs67167156	1.00[AMR][1000 genomes]
rs6788822	1.00[AMR][1000 genomes]
rs73012220	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012225	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012245	1.00[AMR][1000 genomes]
rs73014113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73022671	1.00[AMR][1000 genomes]
rs73024663	1.00[AMR][1000 genomes]
rs73026681	1.00[AMR][1000 genomes]
rs73026692	1.00[AMR][1000 genomes]
rs73026694	1.00[AMR][1000 genomes]
rs73026697	1.00[AMR][1000 genomes]
rs73028515	1.00[AMR][1000 genomes]
rs73028523	1.00[AMR][1000 genomes]
rs73028525	1.00[AMR][1000 genomes]
rs73028526	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155936400-155941600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:155936600-155945400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:155936600-155951000	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links