Variant report

Variant	rs6788822
Chromosome Location	chr3:155879074-155879075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16825644	1.00[AMR][1000 genomes]
rs36106222	0.84[AFR][1000 genomes]
rs57615525	1.00[AMR][1000 genomes]
rs58151385	1.00[AMR][1000 genomes]
rs58387367	1.00[AMR][1000 genomes]
rs60206885	1.00[AMR][1000 genomes]
rs67167156	1.00[AMR][1000 genomes]
rs6784161	1.00[AMR][1000 genomes]
rs73012220	1.00[AMR][1000 genomes]
rs73012225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012245	1.00[AMR][1000 genomes]
rs73012954	1.00[AMR][1000 genomes]
rs73014113	1.00[AMR][1000 genomes]
rs73014850	1.00[AMR][1000 genomes]
rs73018956	1.00[AMR][1000 genomes]
rs73018983	1.00[AMR][1000 genomes]
rs73018986	1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73022671	1.00[AMR][1000 genomes]
rs73024663	1.00[AMR][1000 genomes]
rs73026681	1.00[AMR][1000 genomes]
rs73026692	1.00[AMR][1000 genomes]
rs73026694	1.00[AMR][1000 genomes]
rs73026697	1.00[AMR][1000 genomes]
rs73028515	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028523	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028525	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028526	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155877600-155880000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:155877800-155879600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:155878000-155879400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:155878200-155879200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:155878200-155879400	Enhancers	Primary T cells from cord blood	blood
7	chr3:155878200-155880000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:155878200-155880000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:155878400-155879200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:155878400-155879200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:155878400-155879200	Enhancers	Small Intestine	intestine
12	chr3:155878400-155879200	Enhancers	Hela-S3	cervix
13	chr3:155878400-155879400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:155878400-155879600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr3:155878400-155879600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:155878600-155879200	Active TSS	Colon Smooth Muscle	Colon
17	chr3:155878600-155879200	Enhancers	Fetal Thymus	thymus
18	chr3:155878600-155879400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:155878600-155879400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:155878600-155879400	Enhancers	HUVEC	blood vessel
21	chr3:155878600-155880400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr3:155878800-155879200	Enhancers	Primary B cells from peripheral blood	blood
23	chr3:155878800-155879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:155878800-155879400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:155878800-155879800	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr3:155878800-155880400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:155878800-155883600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:155879000-155879200	Enhancers	Primary hematopoietic stem cells	blood
29	chr3:155879000-155879200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr3:155879000-155879400	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr3:155879000-155880000	Enhancers	GM12878-XiMat	blood

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