Variant report

Variant	rs58387367
Chromosome Location	chr3:155936125-155936126
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57615525	1.00[AMR][1000 genomes]
rs58151385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60206885	1.00[AMR][1000 genomes]
rs67167156	1.00[AMR][1000 genomes]
rs6784161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6788822	1.00[AMR][1000 genomes]
rs73012220	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012225	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012245	1.00[AMR][1000 genomes]
rs73014113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73022671	1.00[AMR][1000 genomes]
rs73024663	1.00[AMR][1000 genomes]
rs73026681	1.00[AMR][1000 genomes]
rs73026692	1.00[AMR][1000 genomes]
rs73026694	1.00[AMR][1000 genomes]
rs73026697	1.00[AMR][1000 genomes]
rs73028515	1.00[AMR][1000 genomes]
rs73028523	1.00[AMR][1000 genomes]
rs73028525	1.00[AMR][1000 genomes]
rs73028526	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155933400-155936400	Enhancers	HSMMtube	muscle
2	chr3:155934200-155936400	Enhancers	HepG2	liver
3	chr3:155934800-155936400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:155935200-155936600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:155935400-155936200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:155935400-155936200	Flanking Active TSS	Osteobl	bone
7	chr3:155935400-155936400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:155935400-155936400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:155935400-155936400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:155935400-155936400	Enhancers	HMEC	breast
11	chr3:155935400-155936400	Enhancers	HSMM	muscle
12	chr3:155935400-155936600	Enhancers	NHEK	skin
13	chr3:155935600-155936200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:155935600-155936200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:155935600-155936400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:155935600-155936400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:155935600-155936400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:155935600-155936400	Flanking Active TSS	Hela-S3	cervix
19	chr3:155935800-155936200	Genic enhancers	Aorta	Aorta
20	chr3:155935800-155936200	Enhancers	Lung	lung
21	chr3:155935800-155936400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:155935800-155936400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:155935800-155936400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr3:155935800-155936400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:155935800-155936400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr3:155935800-155936600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:155936000-155936200	Flanking Bivalent TSS/Enh	Placenta	Placenta

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