Variant report
| Variant | rs60206885 |
|---|---|
| Chromosome Location | chr3:155807726-155807727 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:155803528..155806801-chr3:155807011..155810632,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs16825644 | 1.00[AMR][1000 genomes] |
| rs57615525 | 1.00[AMR][1000 genomes] |
| rs58151385 | 1.00[AMR][1000 genomes] |
| rs58387367 | 1.00[AMR][1000 genomes] |
| rs59555928 | 1.00[AMR][1000 genomes] |
| rs60579449 | 1.00[AMR][1000 genomes] |
| rs67167156 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6770571 | 0.90[AFR][1000 genomes] |
| rs6784161 | 1.00[AMR][1000 genomes] |
| rs6788822 | 1.00[AMR][1000 genomes] |
| rs73011111 | 1.00[AMR][1000 genomes] |
| rs73011129 | 1.00[AMR][1000 genomes] |
| rs73011200 | 1.00[AMR][1000 genomes] |
| rs73012220 | 1.00[AMR][1000 genomes] |
| rs73012225 | 1.00[AMR][1000 genomes] |
| rs73012245 | 1.00[AMR][1000 genomes] |
| rs73012911 | 1.00[AMR][1000 genomes] |
| rs73012929 | 1.00[AMR][1000 genomes] |
| rs73012940 | 1.00[AMR][1000 genomes] |
| rs73012954 | 1.00[AMR][1000 genomes] |
| rs73014113 | 1.00[AMR][1000 genomes] |
| rs73014850 | 1.00[AMR][1000 genomes] |
| rs73018956 | 1.00[AMR][1000 genomes] |
| rs73018983 | 1.00[AMR][1000 genomes] |
| rs73018986 | 1.00[AMR][1000 genomes] |
| rs73018995 | 1.00[AMR][1000 genomes] |
| rs73022671 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73024650 | 0.82[AFR][1000 genomes] |
| rs73024663 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73026664 | 0.82[AFR][1000 genomes] |
| rs73026670 | 0.82[AFR][1000 genomes] |
| rs73026681 | 1.00[AMR][1000 genomes] |
| rs73026692 | 1.00[AMR][1000 genomes] |
| rs73026694 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73026697 | 1.00[AMR][1000 genomes] |
| rs73028515 | 1.00[AMR][1000 genomes] |
| rs73028523 | 1.00[AMR][1000 genomes] |
| rs73028525 | 1.00[AMR][1000 genomes] |
| rs73028526 | 1.00[AMR][1000 genomes] |
| rs7645121 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592084 | chr3:155751484-155830578 | Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:155800200-155811800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr3:155806800-155808200 | Enhancers | Fetal Brain Male | brain |
