Variant report

Variant	rs73012225
Chromosome Location	chr3:155924965-155924966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16825644	1.00[AMR][1000 genomes]
rs57615525	1.00[AMR][1000 genomes]
rs58151385	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58387367	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60206885	1.00[AMR][1000 genomes]
rs67167156	1.00[AMR][1000 genomes]
rs6784161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6788822	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012220	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012245	1.00[AMR][1000 genomes]
rs73014113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018983	1.00[AMR][1000 genomes]
rs73018986	1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73022671	1.00[AMR][1000 genomes]
rs73024663	1.00[AMR][1000 genomes]
rs73026681	1.00[AMR][1000 genomes]
rs73026692	1.00[AMR][1000 genomes]
rs73026694	1.00[AMR][1000 genomes]
rs73026697	1.00[AMR][1000 genomes]
rs73028515	1.00[AMR][1000 genomes]
rs73028523	1.00[AMR][1000 genomes]
rs73028525	1.00[AMR][1000 genomes]
rs73028526	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155918200-155928400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:155919600-155926000	Weak transcription	Aorta	Aorta
3	chr3:155920200-155925800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:155920200-155926000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:155922400-155925000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:155922600-155929800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:155923600-155926000	Enhancers	Osteobl	bone
8	chr3:155923600-155927000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:155923800-155926600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:155924000-155926800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:155924800-155926800	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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