Variant report

Variant	rs6790987
Chromosome Location	chr3:155875647-155875648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13065597	1.00[JPT][hapmap]
rs13070168	1.00[JPT][hapmap]
rs13070615	1.00[JPT][hapmap]
rs13077031	1.00[JPT][hapmap]
rs55720401	1.00[ASN][1000 genomes]
rs57615525	1.00[ASN][1000 genomes]
rs6809972	1.00[ASN][1000 genomes]
rs73026681	1.00[ASN][1000 genomes]
rs73026692	1.00[ASN][1000 genomes]
rs73026697	1.00[ASN][1000 genomes]
rs73028525	0.89[EUR][1000 genomes]
rs73876115	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73876120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647673	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870200-155875800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155870200-155876400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:155870400-155917800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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