Variant report

Variant	rs13069492
Chromosome Location	chr3:155948638-155948639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:155948088-155949063	Hela-S3	cervix:	n/a	n/a
2	FOXA1	chr3:155948033-155948646	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
KCNAB1-AS2	TF binding region

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs13058807	1.00[ASN][1000 genomes]
rs13059614	1.00[ASN][1000 genomes]
rs13062883	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065118	1.00[ASN][1000 genomes]
rs13069920	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070615	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13070956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074749	1.00[ASN][1000 genomes]
rs13076854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077031	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13077891	1.00[ASN][1000 genomes]
rs13077893	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079160	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13084227	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13084675	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13085088	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13085540	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13086158	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13086539	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086888	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13092781	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098116	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099875	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499053	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825721	1.00[ASN][1000 genomes]
rs16825722	1.00[ASN][1000 genomes]
rs17350157	1.00[ASN][1000 genomes]
rs2013676	1.00[ASN][1000 genomes]
rs28454940	1.00[ASN][1000 genomes]
rs28653682	1.00[ASN][1000 genomes]
rs28670754	1.00[ASN][1000 genomes]
rs34176040	1.00[ASN][1000 genomes]
rs34431563	1.00[ASN][1000 genomes]
rs34447473	1.00[ASN][1000 genomes]
rs34582489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611996	1.00[ASN][1000 genomes]
rs34636155	1.00[ASN][1000 genomes]
rs34721485	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34769075	1.00[ASN][1000 genomes]
rs34786673	1.00[ASN][1000 genomes]
rs34859273	1.00[ASN][1000 genomes]
rs34965136	1.00[ASN][1000 genomes]
rs34971897	1.00[ASN][1000 genomes]
rs35081098	1.00[ASN][1000 genomes]
rs35120330	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35186736	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35306833	1.00[ASN][1000 genomes]
rs35336094	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35385116	1.00[ASN][1000 genomes]
rs35388604	1.00[ASN][1000 genomes]
rs35489883	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35692708	1.00[ASN][1000 genomes]
rs35935941	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35938711	1.00[ASN][1000 genomes]
rs35972274	1.00[ASN][1000 genomes]
rs36023787	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36101183	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36106222	1.00[ASN][1000 genomes]
rs36124391	1.00[ASN][1000 genomes]
rs4378930	1.00[ASN][1000 genomes]
rs55868315	1.00[ASN][1000 genomes]
rs57525215	1.00[ASN][1000 genomes]
rs58487502	1.00[ASN][1000 genomes]
rs59260261	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59289038	1.00[ASN][1000 genomes]
rs6441048	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66496214	1.00[ASN][1000 genomes]
rs66718940	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67049008	1.00[ASN][1000 genomes]
rs67139403	1.00[ASN][1000 genomes]
rs67148190	1.00[ASN][1000 genomes]
rs67258913	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67341546	1.00[ASN][1000 genomes]
rs67420553	1.00[ASN][1000 genomes]
rs67482406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770125	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775190	1.00[ASN][1000 genomes]
rs67780510	1.00[ASN][1000 genomes]
rs67899274	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67955446	1.00[ASN][1000 genomes]
rs68058925	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs68176279	1.00[ASN][1000 genomes]
rs68188495	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310462	1.00[ASN][1000 genomes]
rs71310463	1.00[ASN][1000 genomes]
rs71310465	1.00[ASN][1000 genomes]
rs71623492	1.00[ASN][1000 genomes]
rs73161026	1.00[ASN][1000 genomes]
rs73162706	1.00[ASN][1000 genomes]
rs73873481	1.00[ASN][1000 genomes]
rs7615469	1.00[ASN][1000 genomes]
rs7617514	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627181	1.00[ASN][1000 genomes]
rs7627649	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627831	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639203	1.00[ASN][1000 genomes]
rs7641186	1.00[ASN][1000 genomes]
rs7644218	1.00[ASN][1000 genomes]
rs7649451	1.00[ASN][1000 genomes]
rs9683003	1.00[ASN][1000 genomes]
rs9813738	1.00[ASN][1000 genomes]
rs9837458	1.00[ASN][1000 genomes]
rs9874263	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155936600-155951000	Weak transcription	Aorta	Aorta
2	chr3:155942000-155951200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:155945800-155954400	Weak transcription	Pancreas	Pancrea
4	chr3:155948000-155949000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:155948000-155949000	Enhancers	NHEK	skin
6	chr3:155948200-155949000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:155948600-155948800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:155948600-155948800	Bivalent Enhancer	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links