Variant report
| Variant | rs57525215 |
|---|---|
| Chromosome Location | chr3:155753584-155753585 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:99)
| rs_ID | r2[population] |
|---|---|
| rs13058807 | 1.00[ASN][1000 genomes] |
| rs13059614 | 1.00[ASN][1000 genomes] |
| rs13062883 | 1.00[ASN][1000 genomes] |
| rs13065118 | 1.00[ASN][1000 genomes] |
| rs13069492 | 1.00[ASN][1000 genomes] |
| rs13074749 | 1.00[ASN][1000 genomes] |
| rs13076854 | 1.00[ASN][1000 genomes] |
| rs13077891 | 1.00[ASN][1000 genomes] |
| rs13077893 | 1.00[ASN][1000 genomes] |
| rs13085540 | 1.00[ASN][1000 genomes] |
| rs13086158 | 1.00[ASN][1000 genomes] |
| rs13086539 | 1.00[ASN][1000 genomes] |
| rs13086888 | 1.00[ASN][1000 genomes] |
| rs13092781 | 1.00[ASN][1000 genomes] |
| rs13094737 | 1.00[ASN][1000 genomes] |
| rs13098116 | 1.00[ASN][1000 genomes] |
| rs13099875 | 1.00[ASN][1000 genomes] |
| rs1499053 | 1.00[ASN][1000 genomes] |
| rs16825721 | 1.00[ASN][1000 genomes] |
| rs16825722 | 1.00[ASN][1000 genomes] |
| rs2013676 | 1.00[ASN][1000 genomes] |
| rs28454940 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28653682 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28670754 | 1.00[ASN][1000 genomes] |
| rs34176040 | 1.00[ASN][1000 genomes] |
| rs34431563 | 1.00[ASN][1000 genomes] |
| rs34447473 | 1.00[ASN][1000 genomes] |
| rs34582489 | 1.00[ASN][1000 genomes] |
| rs34611996 | 1.00[ASN][1000 genomes] |
| rs34636155 | 1.00[ASN][1000 genomes] |
| rs34721485 | 1.00[ASN][1000 genomes] |
| rs34769075 | 1.00[ASN][1000 genomes] |
| rs34786673 | 1.00[ASN][1000 genomes] |
| rs34859273 | 1.00[ASN][1000 genomes] |
| rs34965136 | 1.00[ASN][1000 genomes] |
| rs34971897 | 1.00[ASN][1000 genomes] |
| rs35081098 | 1.00[ASN][1000 genomes] |
| rs35120330 | 1.00[ASN][1000 genomes] |
| rs35306833 | 1.00[ASN][1000 genomes] |
| rs35336094 | 1.00[ASN][1000 genomes] |
| rs35385116 | 1.00[ASN][1000 genomes] |
| rs35388604 | 1.00[ASN][1000 genomes] |
| rs35692708 | 1.00[ASN][1000 genomes] |
| rs35938711 | 1.00[ASN][1000 genomes] |
| rs35972274 | 1.00[ASN][1000 genomes] |
| rs36101183 | 1.00[ASN][1000 genomes] |
| rs36106222 | 1.00[ASN][1000 genomes] |
| rs36124391 | 1.00[ASN][1000 genomes] |
| rs4378930 | 1.00[ASN][1000 genomes] |
| rs55868315 | 1.00[ASN][1000 genomes] |
| rs56213840 | 1.00[ASN][1000 genomes] |
| rs58227176 | 1.00[ASN][1000 genomes] |
| rs58487502 | 1.00[ASN][1000 genomes] |
| rs59289038 | 1.00[ASN][1000 genomes] |
| rs6441048 | 1.00[ASN][1000 genomes] |
| rs66496214 | 1.00[ASN][1000 genomes] |
| rs66718940 | 1.00[ASN][1000 genomes] |
| rs67049008 | 1.00[ASN][1000 genomes] |
| rs67139403 | 1.00[ASN][1000 genomes] |
| rs67148190 | 1.00[ASN][1000 genomes] |
| rs67341546 | 1.00[ASN][1000 genomes] |
| rs67420553 | 1.00[ASN][1000 genomes] |
| rs6767282 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6770125 | 1.00[ASN][1000 genomes] |
| rs6775190 | 1.00[ASN][1000 genomes] |
| rs67780510 | 1.00[ASN][1000 genomes] |
| rs6781558 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67899274 | 1.00[ASN][1000 genomes] |
| rs67955446 | 1.00[ASN][1000 genomes] |
| rs6805895 | 1.00[ASN][1000 genomes] |
| rs68176279 | 1.00[ASN][1000 genomes] |
| rs68188495 | 1.00[ASN][1000 genomes] |
| rs71310462 | 1.00[ASN][1000 genomes] |
| rs71310463 | 1.00[ASN][1000 genomes] |
| rs71310465 | 1.00[ASN][1000 genomes] |
| rs73159032 | 1.00[ASN][1000 genomes] |
| rs73159054 | 1.00[ASN][1000 genomes] |
| rs73159063 | 1.00[ASN][1000 genomes] |
| rs73159074 | 1.00[ASN][1000 genomes] |
| rs73159092 | 1.00[ASN][1000 genomes] |
| rs73161026 | 1.00[ASN][1000 genomes] |
| rs73162706 | 1.00[ASN][1000 genomes] |
| rs73873481 | 1.00[ASN][1000 genomes] |
| rs7615287 | 1.00[ASN][1000 genomes] |
| rs7615469 | 1.00[ASN][1000 genomes] |
| rs7617514 | 1.00[ASN][1000 genomes] |
| rs7617878 | 1.00[ASN][1000 genomes] |
| rs7627181 | 1.00[ASN][1000 genomes] |
| rs7627649 | 1.00[ASN][1000 genomes] |
| rs7627831 | 1.00[ASN][1000 genomes] |
| rs7639203 | 1.00[ASN][1000 genomes] |
| rs7644218 | 1.00[ASN][1000 genomes] |
| rs7649451 | 1.00[ASN][1000 genomes] |
| rs9683003 | 1.00[ASN][1000 genomes] |
| rs9813738 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9837458 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9850516 | 1.00[ASN][1000 genomes] |
| rs9874263 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9882341 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592084 | chr3:155751484-155830578 | Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:155751400-155754400 | Weak transcription | Brain Cingulate Gyrus | brain |
| 2 | chr3:155751600-155754200 | Weak transcription | Brain Hippocampus Middle | brain |
| 3 | chr3:155751600-155754200 | Weak transcription | Brain Substantia Nigra | brain |
| 4 | chr3:155751600-155754400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 5 | chr3:155751600-155754400 | Weak transcription | Brain Inferior Temporal Lobe | brain |
