Variant report

Variant	rs6781558
Chromosome Location	chr3:155751484-155751485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr3:155751219-155751515	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
VN2R1P	TF binding region
KCNAB1	TF binding region

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs12330401	0.90[CEU][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13058807	1.00[ASN][1000 genomes]
rs13059614	1.00[ASN][1000 genomes]
rs13062883	1.00[ASN][1000 genomes]
rs13065118	1.00[ASN][1000 genomes]
rs13074749	1.00[ASN][1000 genomes]
rs13076854	1.00[ASN][1000 genomes]
rs13077891	1.00[ASN][1000 genomes]
rs13077893	1.00[ASN][1000 genomes]
rs13085540	1.00[ASN][1000 genomes]
rs13086158	1.00[ASN][1000 genomes]
rs13086539	1.00[ASN][1000 genomes]
rs13086888	1.00[ASN][1000 genomes]
rs13092781	1.00[ASN][1000 genomes]
rs13094737	1.00[ASN][1000 genomes]
rs13098116	1.00[ASN][1000 genomes]
rs13099875	1.00[ASN][1000 genomes]
rs1499053	1.00[ASN][1000 genomes]
rs16825721	1.00[ASN][1000 genomes]
rs16825722	1.00[ASN][1000 genomes]
rs2013676	1.00[ASN][1000 genomes]
rs28454940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28653682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28670754	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34176040	1.00[ASN][1000 genomes]
rs34431563	1.00[ASN][1000 genomes]
rs34447473	1.00[ASN][1000 genomes]
rs34611996	1.00[ASN][1000 genomes]
rs34636155	1.00[ASN][1000 genomes]
rs34721485	1.00[ASN][1000 genomes]
rs34769075	1.00[ASN][1000 genomes]
rs34786673	1.00[ASN][1000 genomes]
rs34859273	1.00[ASN][1000 genomes]
rs34908778	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34965136	1.00[ASN][1000 genomes]
rs34971897	1.00[ASN][1000 genomes]
rs35081098	1.00[ASN][1000 genomes]
rs35120330	1.00[ASN][1000 genomes]
rs35306833	1.00[ASN][1000 genomes]
rs35336094	1.00[ASN][1000 genomes]
rs35385116	1.00[ASN][1000 genomes]
rs35388604	1.00[ASN][1000 genomes]
rs35692708	1.00[ASN][1000 genomes]
rs35917295	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35938711	1.00[ASN][1000 genomes]
rs35972274	1.00[ASN][1000 genomes]
rs36101183	1.00[ASN][1000 genomes]
rs36106222	1.00[ASN][1000 genomes]
rs36124391	1.00[ASN][1000 genomes]
rs4378930	0.89[GIH][hapmap];1.00[ASN][1000 genomes]
rs55868315	1.00[ASN][1000 genomes]
rs56000398	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56213840	1.00[ASN][1000 genomes]
rs57525215	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58227176	1.00[ASN][1000 genomes]
rs58487502	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59289038	1.00[ASN][1000 genomes]
rs6441048	1.00[ASN][1000 genomes]
rs66496214	1.00[ASN][1000 genomes]
rs66718940	1.00[ASN][1000 genomes]
rs67049008	1.00[ASN][1000 genomes]
rs67139403	1.00[ASN][1000 genomes]
rs67148190	1.00[ASN][1000 genomes]
rs67341546	1.00[ASN][1000 genomes]
rs67420553	1.00[ASN][1000 genomes]
rs6767282	0.80[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770125	1.00[ASN][1000 genomes]
rs6775190	1.00[ASN][1000 genomes]
rs67780510	1.00[ASN][1000 genomes]
rs67899274	1.00[ASN][1000 genomes]
rs67955446	1.00[ASN][1000 genomes]
rs6805895	1.00[ASN][1000 genomes]
rs68176279	1.00[ASN][1000 genomes]
rs68188495	1.00[ASN][1000 genomes]
rs71310462	1.00[ASN][1000 genomes]
rs71310463	1.00[ASN][1000 genomes]
rs71310465	1.00[ASN][1000 genomes]
rs73159032	1.00[ASN][1000 genomes]
rs73159054	1.00[ASN][1000 genomes]
rs73159063	1.00[ASN][1000 genomes]
rs73159074	1.00[ASN][1000 genomes]
rs73159092	1.00[ASN][1000 genomes]
rs73161026	1.00[ASN][1000 genomes]
rs73162706	1.00[ASN][1000 genomes]
rs73873481	1.00[ASN][1000 genomes]
rs7615287	1.00[ASN][1000 genomes]
rs7615469	1.00[ASN][1000 genomes]
rs7617514	1.00[ASN][1000 genomes]
rs7617878	1.00[ASN][1000 genomes]
rs7627181	1.00[ASN][1000 genomes]
rs7627649	1.00[ASN][1000 genomes]
rs7627831	1.00[ASN][1000 genomes]
rs7639203	1.00[ASN][1000 genomes]
rs7644218	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7649451	1.00[ASN][1000 genomes]
rs9683003	1.00[ASN][1000 genomes]
rs9813738	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837458	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848466	0.86[TSI][hapmap]
rs9850516	0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9866512	0.90[CEU][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9874263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882341	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155750800-155751600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:155751000-155751600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:155751000-155751600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:155751000-155751600	Enhancers	Brain Hippocampus Middle	brain
5	chr3:155751000-155751600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr3:155751000-155751600	Enhancers	Brain Substantia Nigra	brain
7	chr3:155751200-155751600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:155751200-155751600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155751400-155754400	Weak transcription	Brain Cingulate Gyrus	brain

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