Variant report

Variant	rs62290674
Chromosome Location	chr4:7656122-7656123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs62290662	1.00[AFR][1000 genomes]
rs62290663	1.00[AFR][1000 genomes]
rs62290664	1.00[AFR][1000 genomes]
rs62290666	1.00[AFR][1000 genomes]
rs62290669	1.00[AFR][1000 genomes]
rs62290673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62290675	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62290677	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62290678	0.89[EUR][1000 genomes]
rs62290680	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62290702	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62290703	1.00[AFR][1000 genomes]
rs62290704	1.00[AFR][1000 genomes]
rs62290705	1.00[AFR][1000 genomes]
rs62290707	1.00[AFR][1000 genomes]
rs62290708	1.00[AFR][1000 genomes]
rs62290710	1.00[AFR][1000 genomes]
rs886368	0.83[EUR][1000 genomes]
rs886369	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878571	chr4:7637297-7743283	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7646600-7656400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:7648400-7658000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr4:7649600-7657400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:7649600-7659000	Enhancers	Ovary	ovary
5	chr4:7649800-7657000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:7650000-7658600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:7650600-7658400	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:7651200-7657400	Enhancers	Brain Hippocampus Middle	brain
9	chr4:7651200-7658600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:7651400-7658600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:7651400-7660400	Weak transcription	Colonic Mucosa	Colon
12	chr4:7651800-7658800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:7652400-7666000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr4:7653000-7657600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr4:7653400-7656800	Weak transcription	Brain Angular Gyrus	brain
16	chr4:7653600-7656800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:7653600-7657000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:7653600-7657000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:7653800-7656600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr4:7654000-7656600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr4:7654000-7656600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:7654000-7656800	Weak transcription	Brain Anterior Caudate	brain
23	chr4:7654000-7657000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr4:7654000-7657000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:7654200-7656800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:7654200-7657000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:7654400-7656200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr4:7654400-7656400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:7654400-7656800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:7654400-7659000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:7654600-7656400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr4:7654800-7656800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:7655000-7656600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr4:7655000-7656800	Weak transcription	NH-A	brain
35	chr4:7655000-7657000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:7655000-7659400	Weak transcription	HepG2	liver
37	chr4:7655200-7656200	Bivalent Enhancer	Fetal Muscle Leg	muscle
38	chr4:7655400-7656800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr4:7655400-7658200	Bivalent Enhancer	Fetal Stomach	stomach
40	chr4:7655400-7658800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:7655600-7656200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:7655600-7656200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
43	chr4:7655600-7656200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr4:7655600-7656400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
45	chr4:7655600-7656600	Weak transcription	Brain Substantia Nigra	brain
46	chr4:7655600-7657200	Weak transcription	HMEC	breast
47	chr4:7655600-7657400	Weak transcription	Esophagus	oesophagus
48	chr4:7655600-7665200	Weak transcription	Spleen	Spleen
49	chr4:7655800-7656800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr4:7655800-7657000	Enhancers	HUES6 Cell Line	embryonic stem cell

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