Variant report

Variant	rs62290703
Chromosome Location	chr4:7662354-7662355
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7656713..7658782-chr4:7660668..7662448,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs62290662	1.00[AFR][1000 genomes]
rs62290663	1.00[AFR][1000 genomes]
rs62290664	1.00[AFR][1000 genomes]
rs62290666	1.00[AFR][1000 genomes]
rs62290669	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62290671	0.91[EUR][1000 genomes]
rs62290674	1.00[AFR][1000 genomes]
rs62290675	1.00[AFR][1000 genomes]
rs62290677	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs62290680	1.00[AFR][1000 genomes]
rs62290702	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs62290704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62290705	1.00[AFR][1000 genomes]
rs62290707	1.00[AFR][1000 genomes]
rs62290708	1.00[AFR][1000 genomes]
rs62290710	1.00[AFR][1000 genomes]
rs886367	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878571	chr4:7637297-7743283	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7652400-7666000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:7655600-7665200	Weak transcription	Spleen	Spleen
3	chr4:7657200-7662400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:7657400-7670400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:7657600-7662400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:7657600-7663200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:7658400-7662600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:7659000-7663000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:7659000-7663400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:7659000-7667400	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:7659000-7680800	Weak transcription	Ovary	ovary
12	chr4:7660200-7666000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:7660200-7669000	Weak transcription	Brain Anterior Caudate	brain
14	chr4:7660200-7669600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:7660400-7666200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:7660400-7666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:7660600-7684400	Weak transcription	Brain Angular Gyrus	brain
18	chr4:7660800-7664000	Weak transcription	HepG2	liver
19	chr4:7661600-7684200	Weak transcription	Brain Substantia Nigra	brain
20	chr4:7661800-7662600	Enhancers	Brain Germinal Matrix	brain
21	chr4:7661800-7662800	Enhancers	Fetal Lung	lung
22	chr4:7662000-7662400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr4:7662000-7663000	Weak transcription	Liver	Liver
24	chr4:7662200-7662400	Enhancers	Fetal Brain Female	brain
25	chr4:7662200-7663200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:7662200-7664200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links