Variant report

Variant	rs62291195
Chromosome Location	chr4:7084557-7084558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:7084172..7086960-chr4:7087354..7090208,2	K562	blood:
2	chr4:6909042..6911543-chr4:7082329..7084821,2	MCF-7	breast:
3	chr4:7083980..7086191-chr4:7094533..7096477,2	K562	blood:
4	chr4:7083964..7086960-chr4:7088708..7091240,2	K562	blood:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10937781	0.85[EUR][1000 genomes]
rs13113578	0.85[EUR][1000 genomes]
rs28488694	0.88[EUR][1000 genomes]
rs3951347	0.85[EUR][1000 genomes]
rs4513569	0.85[EUR][1000 genomes]
rs4689063	0.81[EUR][1000 genomes]
rs4689582	0.81[EUR][1000 genomes]
rs4689588	0.85[EUR][1000 genomes]
rs62291192	0.94[EUR][1000 genomes]
rs62291193	1.00[EUR][1000 genomes]
rs62291194	1.00[EUR][1000 genomes]
rs62291196	1.00[EUR][1000 genomes]
rs62291201	0.88[EUR][1000 genomes]
rs62291204	0.88[EUR][1000 genomes]
rs62291207	0.83[EUR][1000 genomes]
rs6814746	0.85[EUR][1000 genomes]
rs6816992	0.83[EUR][1000 genomes]
rs7666504	0.85[EUR][1000 genomes]
rs7699619	0.85[EUR][1000 genomes]
rs907522	0.85[EUR][1000 genomes]
rs907524	0.85[EUR][1000 genomes]
rs907525	0.85[EUR][1000 genomes]
rs9985704	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7071000-7086200	Weak transcription	Right Atrium	heart
2	chr4:7078200-7086000	Weak transcription	Pancreas	Pancrea
3	chr4:7078800-7085000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:7083000-7085000	Enhancers	K562	blood
5	chr4:7084200-7085800	Weak transcription	Liver	Liver
6	chr4:7084200-7085800	Weak transcription	Ovary	ovary

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