Variant report

Variant	rs13113578
Chromosome Location	chr4:7071843-7071844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6735444..6737148-chr4:7070075..7072641,2	MCF-7	breast:
2	chr4:7041999..7051916-chr4:7066728..7075643,37	MCF-7	breast:
3	chr4:6680867..6683332-chr4:7071667..7073864,2	K562	blood:
4	chr4:6674717..6677154-chr4:7068478..7072724,3	K562	blood:
5	chr4:6678923..6680484-chr4:7070030..7072938,2	K562	blood:
6	chr4:6692793..6697024-chr4:7069937..7072158,3	K562	blood:
7	chr4:6674894..6677783-chr4:7071224..7072790,2	K562	blood:
8	chr4:7058331..7067210-chr4:7067664..7073138,15	MCF-7	breast:
9	chr4:7068769..7071133-chr4:7071155..7076022,5	MCF-7	breast:
10	chr4:6720697..6722575-chr4:7071337..7073157,2	K562	blood:
11	chr4:6721368..6723999-chr4:7071315..7074137,2	MCF-7	breast:
12	chr4:7042421..7051559-chr4:7062214..7072674,24	MCF-7	breast:
13	chr4:6918292..6921152-chr4:7071780..7074246,2	MCF-7	breast:
14	chr4:7052919..7061052-chr4:7065851..7072132,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163993	Chromatin interaction
ENSG00000109519	Chromatin interaction
ENSG00000251580	Chromatin interaction
ENSG00000170846	Chromatin interaction
ENSG00000173011	Chromatin interaction
ENSG00000245748	Chromatin interaction
ENSG00000173013	Chromatin interaction
ENSG00000268791	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10012093	0.87[EUR][1000 genomes]
rs10937781	1.00[EUR][1000 genomes]
rs35580914	1.00[AMR][1000 genomes]
rs3951347	1.00[EUR][1000 genomes]
rs4234794	1.00[AFR][1000 genomes]
rs4513569	1.00[EUR][1000 genomes]
rs4689062	0.90[EUR][1000 genomes]
rs4689063	0.95[EUR][1000 genomes]
rs4689582	0.95[EUR][1000 genomes]
rs4689588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62289160	1.00[AFR][1000 genomes]
rs62289165	1.00[AFR][1000 genomes]
rs62291193	0.85[EUR][1000 genomes]
rs62291194	0.85[EUR][1000 genomes]
rs62291195	0.85[EUR][1000 genomes]
rs62291196	0.85[EUR][1000 genomes]
rs6814746	1.00[EUR][1000 genomes]
rs6832413	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6841824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6849547	0.90[EUR][1000 genomes]
rs7666504	1.00[EUR][1000 genomes]
rs7673889	1.00[AFR][1000 genomes]
rs7699619	1.00[EUR][1000 genomes]
rs871133	0.90[EUR][1000 genomes]
rs907522	1.00[EUR][1000 genomes]
rs907524	1.00[EUR][1000 genomes]
rs907525	1.00[EUR][1000 genomes]
rs9985704	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv4217	chr4:7035512-7080230	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7070600-7072400	Weak transcription	Ovary	ovary
2	chr4:7070800-7072400	Weak transcription	Gastric	stomach
3	chr4:7071000-7072200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:7071000-7072200	Weak transcription	Primary T cells from cord blood	blood
5	chr4:7071000-7072200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:7071000-7072200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:7071000-7072200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:7071000-7072200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:7071000-7072200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:7071000-7072200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:7071000-7072200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:7071000-7072200	Weak transcription	GM12878-XiMat	blood
13	chr4:7071000-7072400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:7071000-7072400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:7071000-7072400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:7071000-7072400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:7071000-7072400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr4:7071000-7072400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:7071000-7072400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:7071000-7072400	Weak transcription	Liver	Liver
21	chr4:7071000-7072400	Weak transcription	Brain Angular Gyrus	brain
22	chr4:7071000-7072400	Weak transcription	Brain Anterior Caudate	brain
23	chr4:7071000-7072400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr4:7071000-7072400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:7071000-7072400	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:7071000-7072400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr4:7071000-7072400	Weak transcription	Fetal Brain Male	brain
28	chr4:7071000-7072400	Weak transcription	Fetal Intestine Large	intestine
29	chr4:7071000-7072400	Weak transcription	Fetal Intestine Small	intestine
30	chr4:7071000-7072400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:7071000-7072400	Weak transcription	Placenta	Placenta
32	chr4:7071000-7072400	Weak transcription	Left Ventricle	heart
33	chr4:7071000-7072400	Weak transcription	Lung	lung
34	chr4:7071000-7072400	Weak transcription	Pancreas	Pancrea
35	chr4:7071000-7072400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:7071000-7072400	Weak transcription	Stomach Mucosa	stomach
37	chr4:7071000-7072400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:7071000-7075200	Weak transcription	A549	lung
39	chr4:7071000-7075600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr4:7071000-7075600	Weak transcription	Psoas Muscle	Psoas
41	chr4:7071000-7075800	Weak transcription	Esophagus	oesophagus
42	chr4:7071000-7075800	Weak transcription	Hela-S3	cervix
43	chr4:7071000-7077800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:7071000-7078600	Weak transcription	Fetal Heart	heart
45	chr4:7071000-7086200	Weak transcription	Right Atrium	heart
46	chr4:7071200-7072000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:7071200-7072000	Weak transcription	Primary hematopoietic stem cells	blood
48	chr4:7071200-7072000	Weak transcription	NHLF	lung
49	chr4:7071200-7072200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr4:7071200-7072200	Weak transcription	Muscle Satellite Cultured Cells	--

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