Variant report

Variant	rs62289165
Chromosome Location	chr4:6962874-6962875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6962320..6964054-chr4:6967764..6970067,3	K562	blood:
2	chr4:6957151..6958977-chr4:6961301..6963114,2	K562	blood:
3	chr4:6960514..6963431-chr4:7068711..7072755,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109519	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13113578	1.00[AFR][1000 genomes]
rs4234794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4689588	1.00[AFR][1000 genomes]
rs62289160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6832413	1.00[AFR][1000 genomes]
rs6841824	1.00[AFR][1000 genomes]
rs6846823	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7665188	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7673889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6928000-6969600	Weak transcription	Aorta	Aorta
2	chr4:6945000-6970200	Weak transcription	Hela-S3	cervix
3	chr4:6945800-6965800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:6946600-6969000	Weak transcription	Dnd41	blood
5	chr4:6950400-6963800	Weak transcription	Small Intestine	intestine
6	chr4:6954000-6964000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:6954400-6965800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:6955800-6976000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:6956000-6964600	Weak transcription	Right Atrium	heart
10	chr4:6956000-6967000	Weak transcription	Psoas Muscle	Psoas
11	chr4:6956000-6976000	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:6956200-6963000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:6956200-6963800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:6956200-6964000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:6956200-6964400	Weak transcription	Adipose Nuclei	Adipose
16	chr4:6956200-6964400	Weak transcription	Colonic Mucosa	Colon
17	chr4:6956200-6964600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr4:6956200-6964600	Weak transcription	NHLF	lung
19	chr4:6956200-6965000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr4:6956400-6969200	Weak transcription	K562	blood
21	chr4:6957400-6963200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:6957400-6963800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:6957600-6963400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:6957600-6963600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr4:6957600-6963800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:6957600-6970400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:6957600-6973800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:6957600-6976000	Weak transcription	Fetal Lung	lung
29	chr4:6957800-6976000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:6958400-6963800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:6958400-6964400	Weak transcription	Right Ventricle	heart
32	chr4:6958400-6975800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:6958600-6963000	Weak transcription	Esophagus	oesophagus
34	chr4:6958800-6963800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr4:6958800-6967400	Weak transcription	Thymus	Thymus
36	chr4:6958800-6969400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:6959000-6963400	Weak transcription	Lung	lung
38	chr4:6959000-6963400	Weak transcription	Spleen	Spleen
39	chr4:6959000-6964600	Weak transcription	A549	lung
40	chr4:6959200-6963000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr4:6959200-6968800	Weak transcription	Primary T cells from cord blood	blood
42	chr4:6959400-6964600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:6959400-6967200	Weak transcription	Ovary	ovary
44	chr4:6959600-6964400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:6960000-6963400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:6960000-6963400	Weak transcription	Placenta	Placenta
47	chr4:6960000-6963600	Weak transcription	HepG2	liver
48	chr4:6960000-6964400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:6960400-6963800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr4:6960400-6963800	Weak transcription	Stomach Mucosa	stomach

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