Variant report

Variant	rs6841824
Chromosome Location	chr4:7042490-7042491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:7042464-7042907	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:6999677..7002587-chr4:7042055..7044238,2	K562	blood:
2	chr4:7041999..7051916-chr4:7066728..7075643,37	MCF-7	breast:
3	chr4:7042421..7051559-chr4:7062214..7072674,24	MCF-7	breast:
4	chr4:7041068..7043471-chr4:7072135..7073962,2	K562	blood:

Variant related genes	Relation type
TADA2B	TF binding region
ENSG00000132405	Chromatin interaction
ENSG00000109519	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10012093	0.87[EUR][1000 genomes]
rs10937781	0.90[EUR][1000 genomes]
rs13113578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35580914	1.00[AMR][1000 genomes]
rs3951347	0.90[EUR][1000 genomes]
rs4234794	1.00[AFR][1000 genomes]
rs4513569	0.90[EUR][1000 genomes]
rs4689062	1.00[EUR][1000 genomes]
rs4689063	0.95[EUR][1000 genomes]
rs4689582	0.95[EUR][1000 genomes]
rs4689588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62289160	1.00[AFR][1000 genomes]
rs62289165	1.00[AFR][1000 genomes]
rs6814746	0.90[EUR][1000 genomes]
rs6832413	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6849547	1.00[EUR][1000 genomes]
rs7666504	0.90[EUR][1000 genomes]
rs7673889	1.00[AFR][1000 genomes]
rs7699619	0.90[EUR][1000 genomes]
rs871133	1.00[EUR][1000 genomes]
rs907522	0.90[EUR][1000 genomes]
rs907524	0.90[EUR][1000 genomes]
rs907525	0.90[EUR][1000 genomes]
rs9985704	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv878532	chr4:7010504-7055603	Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv878533	chr4:7032180-7063524	Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv4217	chr4:7035512-7080230	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6994000-7043200	Weak transcription	Right Atrium	heart
2	chr4:7011600-7043600	Weak transcription	Psoas Muscle	Psoas
3	chr4:7013200-7044400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:7018400-7043200	Weak transcription	Fetal Heart	heart
5	chr4:7032800-7044000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:7033000-7043600	Weak transcription	Fetal Kidney	kidney
7	chr4:7033200-7043600	Weak transcription	Fetal Brain Male	brain
8	chr4:7033400-7043200	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:7033400-7043400	Weak transcription	HUVEC	blood vessel
10	chr4:7033800-7043800	Weak transcription	Small Intestine	intestine
11	chr4:7034400-7043000	Weak transcription	Right Ventricle	heart
12	chr4:7034400-7043000	Weak transcription	HSMMtube	muscle
13	chr4:7034400-7043400	Weak transcription	Primary B cells from cord blood	blood
14	chr4:7034400-7043600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:7034400-7043800	Weak transcription	Dnd41	blood
16	chr4:7034400-7044000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:7034400-7044000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr4:7034600-7042800	Weak transcription	Brain Angular Gyrus	brain
19	chr4:7034600-7042800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:7034600-7043000	Weak transcription	Adipose Nuclei	Adipose
21	chr4:7034600-7043000	Weak transcription	Left Ventricle	heart
22	chr4:7034600-7043000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:7034600-7043200	Weak transcription	Fetal Brain Female	brain
24	chr4:7034600-7043200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:7034600-7043400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:7034600-7043600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:7034600-7043800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr4:7034800-7043000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr4:7034800-7043000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:7034800-7043000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:7034800-7043600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr4:7035000-7043000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr4:7035000-7043800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr4:7035200-7043000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:7035200-7043000	Weak transcription	Colonic Mucosa	Colon
36	chr4:7035200-7043000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:7035200-7043000	Weak transcription	Fetal Intestine Large	intestine
38	chr4:7035200-7043000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:7035200-7043000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr4:7035200-7043200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr4:7035400-7042800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:7035400-7043000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr4:7035400-7043000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr4:7035400-7043000	Weak transcription	Fetal Muscle Leg	muscle
45	chr4:7035400-7043000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:7035400-7043600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr4:7035600-7042800	Weak transcription	Fetal Intestine Small	intestine
48	chr4:7035600-7043000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr4:7035600-7043000	Weak transcription	Fetal Stomach	stomach
50	chr4:7035600-7043000	Weak transcription	Spleen	Spleen

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