Variant report

Variant	rs35580914
Chromosome Location	chr4:6916578-6916579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6914259..6917373-chr4:7000234..7002877,3	K562	blood:
2	chr4:6915438..6917979-chr4:7015652..7017784,2	K562	blood:
3	chr4:6916484..6919201-chr4:7044719..7046815,2	K562	blood:
4	chr4:6916306..6917914-chr4:6943424..6945236,2	K562	blood:
5	chr4:6916306..6918370-chr4:6943424..6946324,3	K562	blood:
6	chr4:6783882..6785395-chr4:6916396..6918068,2	K562	blood:
7	chr4:6891115..6895158-chr4:6915729..6918708,4	K562	blood:
8	chr4:6716043..6719263-chr4:6915351..6918463,3	K562	blood:

Variant related genes	Relation type
ENSG00000173013	Chromatin interaction
ENSG00000170871	Chromatin interaction
ENSG00000173011	Chromatin interaction
ENSG00000186222	Chromatin interaction
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13113578	1.00[AMR][1000 genomes]
rs4689588	1.00[AMR][1000 genomes]
rs6841824	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6912600-6917200	Weak transcription	Small Intestine	intestine
2	chr4:6912600-6918000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:6912600-6918000	Weak transcription	HUVEC	blood vessel
4	chr4:6912600-6920000	Weak transcription	HSMM	muscle
5	chr4:6912600-6925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:6912800-6918000	Weak transcription	HMEC	breast
7	chr4:6912800-6918200	Weak transcription	NH-A	brain
8	chr4:6912800-6918200	Weak transcription	NHEK	skin
9	chr4:6913000-6918200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:6913000-6918200	Weak transcription	Fetal Heart	heart
11	chr4:6913000-6918200	Weak transcription	A549	lung
12	chr4:6913000-6918400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:6913000-6918400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr4:6913000-6918400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr4:6913000-6918400	Weak transcription	Ovary	ovary
16	chr4:6913000-6918400	Weak transcription	HSMMtube	muscle
17	chr4:6913200-6916800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:6913200-6917000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:6913200-6917200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:6913200-6917800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:6913200-6918200	Weak transcription	Fetal Brain Female	brain
22	chr4:6913200-6919000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:6913200-6922600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr4:6913200-6925200	Weak transcription	NHLF	lung
25	chr4:6913400-6917000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:6913400-6917200	Weak transcription	Fetal Stomach	stomach
27	chr4:6913400-6917200	Weak transcription	Stomach Mucosa	stomach
28	chr4:6913400-6918000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr4:6913400-6918000	Weak transcription	GM12878-XiMat	blood
30	chr4:6913400-6918200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:6913400-6918200	Enhancers	Primary T cells fromperipheralblood	blood
32	chr4:6913400-6918200	Weak transcription	Fetal Brain Male	brain
33	chr4:6913400-6918400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:6913400-6918400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:6913400-6918400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr4:6913600-6916800	Weak transcription	Lung	lung
37	chr4:6913600-6917000	Weak transcription	Colonic Mucosa	Colon
38	chr4:6913600-6917200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr4:6913600-6917200	Weak transcription	Esophagus	oesophagus
40	chr4:6913600-6917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:6913600-6918000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr4:6913600-6918000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:6913600-6918000	Weak transcription	Psoas Muscle	Psoas
44	chr4:6913600-6918200	Weak transcription	Colon Smooth Muscle	Colon
45	chr4:6913600-6918400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr4:6913600-6918400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr4:6913600-6918400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr4:6913600-6918400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr4:6913600-6920000	Enhancers	Liver	Liver
50	chr4:6913600-6920200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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