Variant report

Variant	rs7673889
Chromosome Location	chr4:7022676-7022677
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:7021136..7024360-chr4:7026095..7028817,3	K562	blood:
2	chr4:6722979..6724789-chr4:7021205..7023795,2	MCF-7	breast:
3	chr4:6987057..6989415-chr4:7022132..7024597,3	K562	blood:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10012093	1.00[CEU][hapmap]
rs13113578	1.00[AFR][1000 genomes]
rs4234794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4689062	1.00[CEU][hapmap]
rs4689588	1.00[AFR][1000 genomes]
rs62289160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62289165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832413	1.00[AFR][1000 genomes]
rs6841824	1.00[AFR][1000 genomes]
rs6846823	1.00[AMR][1000 genomes]
rs7665188	1.00[AMR][1000 genomes]
rs907522	1.00[CEU][hapmap]
rs9985704	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv593547	chr4:7002344-7032180	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv878532	chr4:7010504-7055603	Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6994000-7035600	Strong transcription	Fetal Stomach	stomach
2	chr4:6994000-7043200	Weak transcription	Right Atrium	heart
3	chr4:6994200-7035400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:6995800-7032800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:6996000-7035200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:6996400-7034800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:7000600-7034400	Strong transcription	Dnd41	blood
8	chr4:7001400-7034600	Strong transcription	Primary T cells from cord blood	blood
9	chr4:7001600-7035200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr4:7001600-7035400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr4:7001800-7029000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr4:7001800-7035000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:7002000-7034400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:7002200-7035400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr4:7002400-7034400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:7003600-7032600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:7008200-7034600	Strong transcription	Fetal Brain Female	brain
18	chr4:7008200-7035200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr4:7008400-7022800	Strong transcription	NHEK	skin
20	chr4:7008400-7035400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:7008400-7035400	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:7008800-7035000	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:7009800-7035200	Strong transcription	Fetal Intestine Large	intestine
24	chr4:7009800-7035600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr4:7010000-7034600	Strong transcription	Adipose Nuclei	Adipose
26	chr4:7010200-7024400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:7010200-7032600	Weak transcription	Stomach Mucosa	stomach
28	chr4:7010800-7035000	Strong transcription	Esophagus	oesophagus
29	chr4:7011200-7024400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr4:7011600-7036600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr4:7011600-7043600	Weak transcription	Psoas Muscle	Psoas
32	chr4:7013200-7044400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr4:7014200-7032800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:7014400-7034400	Strong transcription	Fetal Thymus	thymus
35	chr4:7014600-7028400	Strong transcription	Colonic Mucosa	Colon
36	chr4:7014600-7034600	Strong transcription	Thymus	Thymus
37	chr4:7014800-7023200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:7014800-7029800	Strong transcription	Pancreas	Pancrea
39	chr4:7015400-7023600	Weak transcription	HSMM	muscle
40	chr4:7015400-7026800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr4:7016000-7031600	Weak transcription	HUVEC	blood vessel
42	chr4:7016400-7026600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:7016600-7029200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr4:7016600-7030200	Strong transcription	Primary B cells from peripheral blood	blood
45	chr4:7016600-7034400	Strong transcription	Primary B cells from cord blood	blood
46	chr4:7016800-7023400	Weak transcription	NHDF-Ad	bronchial
47	chr4:7016800-7032600	Strong transcription	Spleen	Spleen
48	chr4:7017400-7029000	Weak transcription	Fetal Brain Male	brain
49	chr4:7018000-7029000	Weak transcription	Fetal Kidney	kidney
50	chr4:7018400-7022800	Weak transcription	Osteobl	bone

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