Variant report

Variant	rs62297310
Chromosome Location	chr4:80603750-80603751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12511432	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12645453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13123130	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13131547	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17447715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4286541	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4286542	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4339239	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4412018	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4426807	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4490487	0.92[AFR][1000 genomes]
rs4536956	0.92[ASN][1000 genomes]
rs4569784	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4594745	0.82[ASN][1000 genomes]
rs4629479	0.92[ASN][1000 genomes]
rs4975103	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4975105	0.92[ASN][1000 genomes]
rs4975106	0.92[ASN][1000 genomes]
rs4975108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55981032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56204003	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62297307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62297311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6534488	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6823216	0.90[ASN][1000 genomes]
rs72649355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7656466	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7684373	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9991602	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1005152	chr4:80549659-80814456	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv997478	chr4:80578536-80669871	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1006225	chr4:80578536-80670045	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv521454	chr4:80598796-80654020	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv594737	chr4:80598796-80669947	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80600000-80604000	Weak transcription	Aorta	Aorta
2	chr4:80601200-80606000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:80601600-80605800	Weak transcription	Dnd41	blood
4	chr4:80602800-80604600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:80603200-80604400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:80603200-80604400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:80603200-80604400	Enhancers	NH-A	brain
8	chr4:80603400-80603800	Enhancers	Stomach Smooth Muscle	stomach
9	chr4:80603400-80604400	Enhancers	Brain Germinal Matrix	brain
10	chr4:80603400-80604600	Enhancers	Colon Smooth Muscle	Colon
11	chr4:80603600-80603800	Enhancers	Brain Hippocampus Middle	brain
12	chr4:80603600-80604200	Active TSS	Brain Cingulate Gyrus	brain

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