Variant report

Variant	rs6534488
Chromosome Location	chr4:80600982-80600983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12511432	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12645453	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13123130	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13131547	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17447715	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4286541	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4286542	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339239	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4412018	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4426807	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4569784	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4975103	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4975108	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55981032	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56204003	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62297307	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62297310	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62297311	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72649355	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7656466	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7684373	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1005152	chr4:80549659-80814456	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv997478	chr4:80578536-80669871	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1006225	chr4:80578536-80670045	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv521454	chr4:80598796-80654020	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv594737	chr4:80598796-80669947	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80597800-80601200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:80598400-80601000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:80599800-80601200	Enhancers	Primary hematopoietic stem cells	blood
4	chr4:80599800-80601600	Enhancers	Fetal Thymus	thymus
5	chr4:80600000-80604000	Weak transcription	Aorta	Aorta
6	chr4:80600200-80601200	Enhancers	K562	blood
7	chr4:80600200-80601400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:80600200-80603200	Weak transcription	NH-A	brain
9	chr4:80600600-80601600	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links