Variant report

Variant	rs62300268
Chromosome Location	chr4:59957533-59957534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11943412	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11943457	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11944415	0.89[ASN][1000 genomes]
rs11947123	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11947124	0.88[ASN][1000 genomes]
rs1565964	0.89[ASN][1000 genomes]
rs1565965	0.89[ASN][1000 genomes]
rs1603287	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2132343	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2333730	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2878005	0.89[ASN][1000 genomes]
rs4364332	0.88[ASN][1000 genomes]
rs4860356	0.89[ASN][1000 genomes]
rs4860357	0.89[ASN][1000 genomes]
rs60141591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62298328	0.82[ASN][1000 genomes]
rs62300262	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs62300269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879045	chr4:59889898-60005301	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879046	chr4:59897952-59998696	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879047	chr4:59900914-60005301	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv829946	chr4:59913771-60083867	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv4352	chr4:59925782-59966004	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59957000-59958000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:59957000-59958200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:59957200-59957600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:59957200-59957600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:59957200-59957800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:59957200-59958000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:59957200-59958200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:59957400-59958000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links