Variant report

Variant	rs623006
Chromosome Location	chr8:69992968-69992969
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13252637	0.85[AFR][1000 genomes]
rs1344618	0.85[AFR][1000 genomes]
rs1344619	0.85[AFR][1000 genomes]
rs1365412	0.85[AFR][1000 genomes]
rs1365416	0.80[AFR][1000 genomes]
rs1426595	0.85[AFR][1000 genomes]
rs1541762	0.85[AFR][1000 genomes]
rs2217103	0.85[AFR][1000 genomes]
rs2912515	0.80[AFR][1000 genomes]
rs2912520	0.80[AFR][1000 genomes]
rs2981047	0.80[AFR][1000 genomes]
rs34771267	0.85[AFR][1000 genomes]
rs639293	0.85[AFR][1000 genomes]
rs7007693	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv890987	chr8:69959105-70004698	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69988800-69993600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:69989600-69993400	Enhancers	Osteobl	bone
3	chr8:69990000-69993800	Enhancers	HSMM	muscle
4	chr8:69990600-69993000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:69990600-69993000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:69990800-69993000	Enhancers	NHDF-Ad	bronchial
7	chr8:69991400-69993000	Enhancers	Aorta	Aorta
8	chr8:69991600-69993000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:69991600-69993000	Enhancers	HSMMtube	muscle
10	chr8:69991600-69993000	Enhancers	NH-A	brain
11	chr8:69992800-69993000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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