Variant report

Variant	rs7007693
Chromosome Location	chr8:69972757-69972758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-664D7.4.1-3	chr8:69972715-69972958	XLOC_007116

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10957460	1.00[ASN][1000 genomes]
rs10957461	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11774986	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13252637	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13272381	0.87[ASN][1000 genomes]
rs1344616	1.00[ASN][1000 genomes]
rs1344617	0.94[ASN][1000 genomes]
rs1344618	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1344619	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1365412	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1365416	0.95[AFR][1000 genomes]
rs1365418	1.00[ASN][1000 genomes]
rs1426595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465514	0.96[ASN][1000 genomes]
rs1465515	0.96[ASN][1000 genomes]
rs1541762	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1965050	0.96[ASN][1000 genomes]
rs1965698	0.99[ASN][1000 genomes]
rs2042734	1.00[ASN][1000 genomes]
rs2162353	1.00[ASN][1000 genomes]
rs2217103	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2912509	1.00[ASN][1000 genomes]
rs2912510	1.00[ASN][1000 genomes]
rs2912515	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2912520	0.95[AFR][1000 genomes]
rs2981044	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2981045	1.00[ASN][1000 genomes]
rs2981047	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981049	1.00[ASN][1000 genomes]
rs2981053	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2981056	1.00[ASN][1000 genomes]
rs2981057	1.00[ASN][1000 genomes]
rs2981058	1.00[ASN][1000 genomes]
rs2981059	1.00[ASN][1000 genomes]
rs2981061	0.93[ASN][1000 genomes]
rs2981062	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981063	1.00[ASN][1000 genomes]
rs2981065	1.00[ASN][1000 genomes]
rs2981066	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34771267	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358809	0.96[ASN][1000 genomes]
rs473477	0.95[CHB][hapmap]
rs608067	0.95[CHB][hapmap]
rs609760	0.95[CHB][hapmap]
rs612423	0.95[CHB][hapmap]
rs623006	0.85[AFR][1000 genomes]
rs62511793	0.88[EUR][1000 genomes]
rs639293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472436	0.95[ASN][1000 genomes]
rs7835428	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv890987	chr8:69959105-70004698	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv1025578	chr8:69963284-69985807	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69960400-69973600	Weak transcription	HSMM	muscle

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