Variant report

Variant	rs6472436
Chromosome Location	chr8:69949284-69949285
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10957460	0.95[ASN][1000 genomes]
rs10957461	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11774986	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13252637	0.94[ASN][1000 genomes]
rs13272381	0.87[ASN][1000 genomes]
rs1344616	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1344617	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1365413	0.91[EUR][1000 genomes]
rs1365414	0.91[EUR][1000 genomes]
rs1365416	0.91[EUR][1000 genomes]
rs1365417	0.89[EUR][1000 genomes]
rs1365418	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1426595	0.95[ASN][1000 genomes]
rs1465514	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1465515	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1559847	0.90[EUR][1000 genomes]
rs1559848	0.91[EUR][1000 genomes]
rs1965050	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1965698	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2042732	0.90[EUR][1000 genomes]
rs2042733	0.90[EUR][1000 genomes]
rs2042734	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2042735	0.90[EUR][1000 genomes]
rs2162353	0.95[ASN][1000 genomes]
rs28437123	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2912509	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2912510	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2912515	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2912518	0.91[EUR][1000 genomes]
rs2912519	0.91[EUR][1000 genomes]
rs2912520	0.91[EUR][1000 genomes]
rs2981041	0.90[EUR][1000 genomes]
rs2981043	0.91[EUR][1000 genomes]
rs2981045	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981047	0.95[ASN][1000 genomes]
rs2981049	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981053	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981056	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981057	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981058	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981059	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981061	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2981062	0.95[ASN][1000 genomes]
rs2981063	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981065	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2981066	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34771267	0.95[ASN][1000 genomes]
rs4358809	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs473477	0.90[EUR][1000 genomes]
rs608067	0.90[EUR][1000 genomes]
rs609760	0.90[EUR][1000 genomes]
rs625096	0.89[EUR][1000 genomes]
rs639293	0.95[ASN][1000 genomes]
rs6472438	0.97[EUR][1000 genomes]
rs7007693	0.95[ASN][1000 genomes]
rs7835428	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69941000-69951600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:69944000-69953600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:69946200-69951600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:69946200-69951600	Weak transcription	NHDF-Ad	bronchial
5	chr8:69946600-69955400	Weak transcription	Fetal Lung	lung
6	chr8:69946800-69951600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:69947400-69951600	Weak transcription	HSMM	muscle
8	chr8:69947600-69951800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:69947800-69951600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:69948000-69951600	Weak transcription	Osteobl	bone

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