Variant report

Variant	rs28437123
Chromosome Location	chr8:69954642-69954643
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10957461	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11774986	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1344616	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1344617	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1344618	1.00[ASN][1000 genomes]
rs1344619	1.00[ASN][1000 genomes]
rs1365412	0.96[ASN][1000 genomes]
rs1365413	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1365414	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1365416	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1365417	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365418	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1465514	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1465515	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1541762	0.96[ASN][1000 genomes]
rs1559847	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1559848	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1965050	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1965698	0.87[EUR][1000 genomes]
rs2042732	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2042733	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2042734	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2042735	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217103	0.96[ASN][1000 genomes]
rs2912509	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2912510	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2912515	0.99[EUR][1000 genomes]
rs2912518	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2912519	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2912520	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2981041	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981043	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2981044	0.90[ASN][1000 genomes]
rs2981045	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2981049	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2981053	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2981056	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2981057	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2981058	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2981059	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2981061	0.88[EUR][1000 genomes]
rs2981063	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2981065	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2981066	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4358809	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs473477	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs608067	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609760	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs612423	1.00[ASN][1000 genomes]
rs625096	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62511793	1.00[ASN][1000 genomes]
rs6472436	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472438	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69946600-69955400	Weak transcription	Fetal Lung	lung
2	chr8:69952000-69959400	Weak transcription	HSMM	muscle
3	chr8:69953800-69955200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:69953800-69959800	Weak transcription	Aorta	Aorta
5	chr8:69954400-69955400	Enhancers	Rectal Smooth Muscle	rectum

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