Variant report

Variant	rs11774986
Chromosome Location	chr8:69953613-69953614
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69942123..69945264-chr8:69951482..69954001,3	MCF-7	breast:
2	chr8:69950771..69953657-chr8:69955628..69958429,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10957460	1.00[ASN][1000 genomes]
rs10957461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252637	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs13272381	0.87[ASN][1000 genomes]
rs1344616	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344617	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1344618	0.90[AFR][1000 genomes]
rs1344619	0.90[AFR][1000 genomes]
rs1365412	0.90[AFR][1000 genomes]
rs1365413	0.92[EUR][1000 genomes]
rs1365414	0.92[EUR][1000 genomes]
rs1365416	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1365417	0.89[EUR][1000 genomes]
rs1365418	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426595	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1465514	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1465515	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1541762	0.90[AFR][1000 genomes]
rs1559847	0.91[EUR][1000 genomes]
rs1559848	0.92[EUR][1000 genomes]
rs1965050	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1965698	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2042732	0.91[EUR][1000 genomes]
rs2042733	0.91[EUR][1000 genomes]
rs2042734	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2042735	0.91[EUR][1000 genomes]
rs2162353	1.00[ASN][1000 genomes]
rs2217103	0.90[AFR][1000 genomes]
rs28437123	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2912509	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2912510	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2912515	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2912518	0.92[EUR][1000 genomes]
rs2912519	0.91[EUR][1000 genomes]
rs2912520	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2981041	0.91[EUR][1000 genomes]
rs2981043	0.92[EUR][1000 genomes]
rs2981044	0.81[AFR][1000 genomes]
rs2981045	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981047	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2981049	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981053	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981056	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981057	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981058	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981059	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981061	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2981062	1.00[ASN][1000 genomes]
rs2981063	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981065	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2981066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34771267	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4358809	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs473477	0.91[EUR][1000 genomes]
rs608067	0.91[EUR][1000 genomes]
rs609760	0.91[EUR][1000 genomes]
rs625096	0.89[EUR][1000 genomes]
rs639293	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6472436	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6472438	0.97[EUR][1000 genomes]
rs7007693	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7835428	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69946600-69955400	Weak transcription	Fetal Lung	lung
2	chr8:69952000-69959400	Weak transcription	HSMM	muscle
3	chr8:69953600-69953800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:69953600-69953800	Enhancers	Aorta	Aorta

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