Variant report
| Variant | rs7835428 |
|---|---|
| Chromosome Location | chr8:69968457-69968458 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:69964582..69966188-chr8:69967897..69970784,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10957460 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10957461 | 1.00[ASN][1000 genomes] |
| rs11774986 | 1.00[ASN][1000 genomes] |
| rs13252637 | 0.99[ASN][1000 genomes] |
| rs13272381 | 0.87[ASN][1000 genomes] |
| rs1344616 | 1.00[ASN][1000 genomes] |
| rs1344617 | 0.94[ASN][1000 genomes] |
| rs1365418 | 1.00[ASN][1000 genomes] |
| rs1426595 | 1.00[ASN][1000 genomes] |
| rs1465514 | 0.96[ASN][1000 genomes] |
| rs1465515 | 0.96[ASN][1000 genomes] |
| rs1965050 | 0.96[ASN][1000 genomes] |
| rs1965698 | 0.99[ASN][1000 genomes] |
| rs2042734 | 1.00[ASN][1000 genomes] |
| rs2162353 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2912509 | 1.00[ASN][1000 genomes] |
| rs2912510 | 1.00[ASN][1000 genomes] |
| rs2912515 | 1.00[ASN][1000 genomes] |
| rs2981045 | 1.00[ASN][1000 genomes] |
| rs2981047 | 1.00[ASN][1000 genomes] |
| rs2981049 | 1.00[ASN][1000 genomes] |
| rs2981053 | 1.00[ASN][1000 genomes] |
| rs2981056 | 1.00[ASN][1000 genomes] |
| rs2981057 | 1.00[ASN][1000 genomes] |
| rs2981058 | 1.00[ASN][1000 genomes] |
| rs2981059 | 1.00[ASN][1000 genomes] |
| rs2981061 | 0.93[ASN][1000 genomes] |
| rs2981062 | 1.00[ASN][1000 genomes] |
| rs2981063 | 1.00[ASN][1000 genomes] |
| rs2981065 | 1.00[ASN][1000 genomes] |
| rs2981066 | 1.00[ASN][1000 genomes] |
| rs34771267 | 1.00[ASN][1000 genomes] |
| rs4358809 | 0.96[ASN][1000 genomes] |
| rs612423 | 0.92[EUR][1000 genomes] |
| rs639293 | 1.00[ASN][1000 genomes] |
| rs6472436 | 0.95[ASN][1000 genomes] |
| rs7007693 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031633 | chr8:69766575-70322790 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv890987 | chr8:69959105-70004698 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 3 | nsv1025578 | chr8:69963284-69985807 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69960400-69973600 | Weak transcription | HSMM | muscle |
