Variant report

Variant	rs13272381
Chromosome Location	chr8:69948427-69948428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10957460	0.87[ASN][1000 genomes]
rs10957461	0.87[ASN][1000 genomes]
rs11774986	0.87[ASN][1000 genomes]
rs13252637	0.86[ASN][1000 genomes]
rs1344616	0.87[ASN][1000 genomes]
rs1344617	0.82[ASN][1000 genomes]
rs1365418	0.87[ASN][1000 genomes]
rs1426595	0.87[ASN][1000 genomes]
rs1465514	0.84[ASN][1000 genomes]
rs1465515	0.84[ASN][1000 genomes]
rs1965050	0.84[ASN][1000 genomes]
rs1965698	0.88[ASN][1000 genomes]
rs2042734	0.87[ASN][1000 genomes]
rs2162353	0.87[ASN][1000 genomes]
rs2912509	0.87[ASN][1000 genomes]
rs2912510	0.87[ASN][1000 genomes]
rs2912515	0.87[ASN][1000 genomes]
rs2981045	0.87[ASN][1000 genomes]
rs2981047	0.87[ASN][1000 genomes]
rs2981049	0.87[ASN][1000 genomes]
rs2981053	0.87[ASN][1000 genomes]
rs2981056	0.87[ASN][1000 genomes]
rs2981057	0.87[ASN][1000 genomes]
rs2981058	0.87[ASN][1000 genomes]
rs2981059	0.87[ASN][1000 genomes]
rs2981061	0.82[ASN][1000 genomes]
rs2981062	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2981063	0.87[ASN][1000 genomes]
rs2981065	0.87[ASN][1000 genomes]
rs2981066	0.87[ASN][1000 genomes]
rs34771267	0.87[ASN][1000 genomes]
rs4358809	0.84[ASN][1000 genomes]
rs639293	0.87[ASN][1000 genomes]
rs6472436	0.87[ASN][1000 genomes]
rs7007693	0.87[ASN][1000 genomes]
rs7835428	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69941000-69951600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:69944000-69953600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:69946200-69951600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:69946200-69951600	Weak transcription	NHDF-Ad	bronchial
5	chr8:69946600-69955400	Weak transcription	Fetal Lung	lung
6	chr8:69946800-69951600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:69947400-69951600	Weak transcription	HSMM	muscle
8	chr8:69947600-69951800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:69947800-69951600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:69948000-69951600	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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