Variant report

Variant	rs62302274
Chromosome Location	chr4:82133661-82133662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10488932	1.00[ASN][1000 genomes]
rs11724446	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377055	1.00[ASN][1000 genomes]
rs1712373	1.00[ASN][1000 genomes]
rs740935	1.00[ASN][1000 genomes]
rs740936	1.00[ASN][1000 genomes]
rs740937	1.00[ASN][1000 genomes]
rs7687899	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82126800-82134800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:82132000-82135000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:82132200-82136200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:82132800-82133800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:82132800-82134000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:82132800-82135400	Active TSS	Fetal Intestine Large	intestine
7	chr4:82133200-82136000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:82133400-82134400	Weak transcription	NHLF	lung
9	chr4:82133400-82134600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:82133600-82133800	Active TSS	NHDF-Ad	bronchial
11	chr4:82133600-82134000	Enhancers	Fetal Brain Male	brain
12	chr4:82133600-82134600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:82133600-82134800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:82133600-82135200	Active TSS	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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