Variant report

Variant	rs740936
Chromosome Location	chr4:82327417-82327418
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:82327008..82327570-chr4:82765988..82766495,2	K562	blood:
2	chr4:82327015..82327603-chr4:83122849..83123538,2	MCF-7	breast:
3	chr4:82326881..82327563-chr4:82770505..82771402,2	MCF-7	breast:
4	chr4:82327037..82327640-chr4:83122910..83123879,5	MCF-7	breast:
5	chr4:82326725..82327501-chr4:82840095..82841287,3	MCF-7	breast:
6	chr4:82326902..82327525-chr4:82765379..82766275,4	MCF-7	breast:
7	chr4:82326919..82327448-chr4:83206445..83206978,2	MCF-7	breast:
8	chr4:82326802..82327531-chr4:83189460..83190762,4	MCF-7	breast:
9	chr4:82326836..82327578-chr4:82476960..82477646,2	K562	blood:
10	chr4:82326953..82327888-chr4:82765613..82766496,6	MCF-7	breast:
11	chr4:82327000..82327810-chr4:82341931..82342605,2	K562	blood:
12	chr4:82326952..82327640-chr4:83139246..83140172,3	MCF-7	breast:
13	chr4:82327052..82327580-chr4:83189067..83189954,2	K562	blood:
14	chr4:82327129..82328804-chr4:82341208..82343737,2	K562	blood:
15	chr4:82327020..82327704-chr4:83189488..83190807,3	MCF-7	breast:
16	chr4:82326946..82327647-chr4:83122824..83123511,5	K562	blood:
17	chr4:82326927..82327852-chr4:82345884..82346881,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10488932	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724446	1.00[ASN][1000 genomes]
rs1377055	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1712373	1.00[ASN][1000 genomes]
rs57966678	0.81[AMR][1000 genomes]
rs59989341	0.81[AMR][1000 genomes]
rs62302274	1.00[ASN][1000 genomes]
rs740935	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740937	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687899	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv980406	chr4:82310479-82337709	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv517921	chr4:82315470-82346835	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82321000-82335800	Weak transcription	Right Atrium	heart
2	chr4:82325600-82327600	Enhancers	Fetal Intestine Small	intestine
3	chr4:82326800-82327600	Enhancers	Adipose Nuclei	Adipose
4	chr4:82326800-82327600	Enhancers	Liver	Liver
5	chr4:82326800-82327600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr4:82326800-82327600	Enhancers	NHEK	skin
7	chr4:82326800-82327800	Enhancers	Brain Hippocampus Middle	brain
8	chr4:82327000-82327600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr4:82327000-82327600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:82327200-82327600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:82327400-82331200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:82327400-82331400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:82327400-82332000	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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